| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,150,610 – 13,150,701 |
| Length | 91 |
| Max. P | 0.671648 |
| Location | 13,150,610 – 13,150,701 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 85.76 |
| Shannon entropy | 0.23499 |
| G+C content | 0.38798 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -16.48 |
| Energy contribution | -16.96 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13150610 91 - 23011544 UAAAAGCUAUAUAGUUGGAAGUUAUUUCAAUUCGAAAUUAGGUCACGAAUCGUCGGAUUUGUGCUGA--------------UUGCUCAGGAUCUUAUGGCUGCUC ....(((((((.((((((((....)))))))).......((((((((((((....))))))).((((--------------....)))))))))))))))).... ( -24.10, z-score = -2.01, R) >droEre2.scaffold_4929 14351422 91 + 26641161 UAAAAGCUAUAUAGUUGGAAGUUAUUUCAAUUGGAAAUUAGGUCACGAAUCGUCGGAUUUGUGCUGA--------------UUGCUUAGGAGGUUAUGGCUGCAC ....((((((((((((((((....)))))))))..((((((..((((((((....))))))))))))--------------))...........))))))).... ( -24.50, z-score = -2.61, R) >droYak2.chr2L 9573943 90 - 22324452 UAAAAGCUAUAUAGUUGGAAGUUAUUUCAAUUGGAAAUUGGGUCACAAAUCGUCGGAUUUGUGCUGA--------------UUGCUUGGCUG-UUAUGGCUGCAC ....(((((((((((..(.(((((((((.....)))))..((.((((((((....))))))))))))--------------))..)..))))-.))))))).... ( -25.50, z-score = -2.72, R) >droSec1.super_16 1305668 92 - 1878335 UAAAACCAAUAUAGUUGGAAGUUAUUUCAAUUCGAAAUUAGGUCACGAAUCGUCGGAUUUGUGCUGAA-------------UUGCUCAGGAGCUUAUGGCUGCUC ....((((((..((((((((....))))))))....))).)))((((((((....))))))))((((.-------------....))))((((........)))) ( -20.70, z-score = -0.76, R) >droSim1.chr2L 12944557 105 - 22036055 UAAAACCUAUAUAGUUCGAAGUUAUUUCAAUUCGAAAUUAGGUCACGAAUCGUCGGAUUUGUGUUCAGGAGCUUAUGGCUUAUGUUCAGGAGCUUAUGGCUGCUC ....(((((.....((((((..........))))))..)))))((((((((....))))))))...((.((((...(((((........)))))...)))).)). ( -29.70, z-score = -2.60, R) >consensus UAAAAGCUAUAUAGUUGGAAGUUAUUUCAAUUCGAAAUUAGGUCACGAAUCGUCGGAUUUGUGCUGA______________UUGCUCAGGAGCUUAUGGCUGCUC ....(((((((.((((((((....))))))))........((.((((((((....)))))))))).............................))))))).... (-16.48 = -16.96 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:05 2011