| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,143,613 – 13,143,722 |
| Length | 109 |
| Max. P | 0.927766 |
| Location | 13,143,613 – 13,143,722 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 93.03 |
| Shannon entropy | 0.12268 |
| G+C content | 0.44037 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13143613 109 - 23011544 ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCAUUGAACUUAUUACUGACCGACACGAUCCAUAUAAAAACGAAAGAAAUUGCAUCUGGCUAUGCAGUUGCCGG ..((((((...)))))).((((.....)))).......................(((..................(....).((((((((......))))))))..))) ( -23.90, z-score = -1.28, R) >droEre2.scaffold_4929 14344264 109 + 26641161 ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCGCUGAACUAAUUACUGGCCGACACGAUCCAUAUAAAAACGAAAGAAACUGCAACCAGCUAUGCAGUUGCCUG ..((((((...)))))).((((.....)))).....................(((....................(....).(((((((........)))))))))).. ( -26.30, z-score = -2.10, R) >droYak2.chr2L 9566402 109 - 22324452 ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCACUGAACUUAUUACCGACCAACACGAUCCAUAUAAAAACGAAAGAAACUGCAACUAGAUAUGCAGUUGCCGG ..((((((...)))))).((((.....))))...................(((......................(....).(((((((........)))))))..))) ( -25.20, z-score = -3.06, R) >droSec1.super_16 1298465 109 - 1878335 ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCACUGAACUUACUGCUGUCCGACACGAUCCAUAUAAAAACGAAAGAAAUUGCAUUAAGCUAUGCAGUUGCCGG ..((((((...)))))).((((.....)))).......................(((..................(....).((((((((......))))))))..))) ( -24.30, z-score = -1.18, R) >droSim1.chr2L 12937256 109 - 22036055 ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCACUGAACUUACUACCGACCGACACGAUCCAUAUAAAAACGAAAGAAAUUGCAUUUAGCUAUGCAGUUGCCGG ..((((((...)))))).((((.....))))...................(((..((((................(....)....(((((......))))))))).))) ( -25.00, z-score = -2.49, R) >consensus ACUUGGGCUUAGCCCAGACUGGAUUUUCCAGAAUUCCACUGAACUUAUUACUGACCGACACGAUCCAUAUAAAAACGAAAGAAAUUGCAUCUAGCUAUGCAGUUGCCGG ..((((((...)))))).((((.....))))...................(((......................(....).((((((((......))))))))..))) (-22.36 = -22.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:02 2011