| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,131,553 – 13,131,646 |
| Length | 93 |
| Max. P | 0.971154 |
| Location | 13,131,553 – 13,131,646 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 63.32 |
| Shannon entropy | 0.70802 |
| G+C content | 0.42799 |
| Mean single sequence MFE | -16.54 |
| Consensus MFE | -5.39 |
| Energy contribution | -6.03 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13131553 93 + 23011544 CCUCAUCGAAAGAUGAGAACAAGCCUCCAGUUAAAAAAAAGUCU------AAAUCCAAGUCAAAAGAUCCACCUAAAACAGUUGAUUCUACUGCACCAG--- .((((((....))))))..........((((.........(.((------.......)).)...(((..((.((.....)).))..)))))))......--- ( -14.80, z-score = -2.58, R) >droSim1.chr2L 12924599 99 + 22036055 CAUCAUCGAAAGAUGAUCACAAACCGCCAGUUAAAAAAGGGUCCCCUUCAAAAUCUAAGUCAAAAGAUCCACCUAAAACAGUUGAUUCUACUGCACCAC--- .((((((....))))))........((.(((.....((((....))))................(((..((.((.....)).))..)))))))).....--- ( -17.40, z-score = -2.37, R) >droSec1.super_16 1286634 87 + 1878335 CCUCAUCGCAAGAUGAGCACAAACCGCCAGUUAAAAAAAGAUCC---------CCU---UCAAAAGAUCCAGCUAAAACAGUUGAUUCUACUGCAACAC--- .((((((....))))))........((.(((........((...---------...---))...(((..(((((.....)))))..)))))))).....--- ( -19.90, z-score = -4.63, R) >droYak2.chr2L 9554281 99 + 22324452 CCUCAUCGGAAGGUGAACACAAACCACCGGCUAAAAAAAAGCCACCUUCAAAACCCAAACCAAAAAAUCCACCUAAAACCGUCGAUUCUAGUGCAUCAG--- ..(((((....))))).(((........((((.......))))......................((((.((........)).))))...)))......--- ( -16.00, z-score = -2.40, R) >droEre2.scaffold_4929 14330556 96 - 26641161 CCUCAGCGAAAGAUGAACACAAACCUCCGGUUAAGAAAAAGCCACCUUCAAAAGCCAAAUCAAAUGAUCCACCUAAAACCGUUG---CCAGUGCAACUG--- ..(((.(....).)))............((((..(((.........))).........(((....)))........))))((((---(....)))))..--- ( -11.90, z-score = -0.33, R) >droAna3.scaffold_12916 3871928 98 - 16180835 -UGCAACGGGCACUGGA-ACAA--CCUCAAAGAAGUCCGAACCUAACAACGGAUCAGUCCUGAAAGAUCCCUUGAAACAAAUCAAACCUAUCCAAGGAUCCA -.....((((.((((((-....--..))......(((((..........)))))))))))))...(((((.(((..................)))))))).. ( -19.27, z-score = -0.67, R) >consensus CCUCAUCGAAAGAUGAACACAAACCGCCAGUUAAAAAAAAGCCACCUUCAAAAUCCAAAUCAAAAGAUCCACCUAAAACAGUUGAUUCUACUGCAACAG___ .((((((....))))))..................................................................................... ( -5.39 = -6.03 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:37:00 2011