Locus 1703

Sequence ID dm3.chr2L
Location 13,129,711 – 13,129,829
Length 118
Max. P 0.661262
window2326

overview

Window 6

Location 13,129,711 – 13,129,829
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 80.74
Shannon entropy 0.26811
G+C content 0.47653
Mean single sequence MFE -28.95
Consensus MFE -23.60
Energy contribution -23.27
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.39
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.36
SVM RNA-class probability 0.661262
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 13129711 118 - 23011544
CAGUUGCCGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGUCGAACAAAACUGCAGAAAAACAUAAAAAAGA
((((((((..((...((((...((((((.................))).)))..))))...))..)))..((..(((((....)))))..))..)))))................... ( -31.23, z-score =  -1.94, R)
>droYak2.chr2L 9552227 117 - 22324452
CAGUUGCCGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUAAAAAUA-
((((((((..((...((((...((((((.................))).)))..))))...))..)))..((..(.(((....))).)..))..)))))..................- ( -29.33, z-score =  -1.22, R)
>droAna3.scaffold_12916 3870266 96 + 16180835
---CGGUAGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCGAAUCAGCAAACGAGGC-AACAAGGUGGCCAGUGAGGCGUGAAAACUGCCAACAAAAAUGC------------------
---.((((((.(((...((..((...((((((.....((......))......(..-..)..))))))..))...)).)))..))))))...........------------------ ( -26.30, z-score =  -1.01, R)
>consensus
CAGUUGCCGUCUCAAUUGCAGACGUCGCCAUCAAUCAGCAAAUCAGCGAACGAGGCAAACAAGGUGGCAAGUGAGGCGUGAAAACGGCGAACAAAACUGCAGAAAAACAUAAAAA___
....((((((((((.((((...(...(((.((.....((......))....)))))......)...)))).))))))((....))))))............................. (-23.60 = -23.27 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:59 2011