| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,125,801 – 13,125,904 |
| Length | 103 |
| Max. P | 0.614554 |
| Location | 13,125,801 – 13,125,904 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Shannon entropy | 0.47751 |
| G+C content | 0.46719 |
| Mean single sequence MFE | -29.91 |
| Consensus MFE | -11.60 |
| Energy contribution | -13.33 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13125801 103 + 23011544 ------ACUUUGAGCGGGCAGCAUGGGUUUUCUUUUUCUCUGGCCGGCUUUUCAUCGAAGUCUGACAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCAG ------(((((((((.(((.....(((..........)))..))).))......)))))))(((........(((((...)))))((((((....)))))).....))) ( -26.30, z-score = -0.54, R) >droEre2.scaffold_4929 14324547 100 - 26641161 ------ACUUCGAGCGGGCAGCAUGGGGUUU-UUGCUCU--GGCCGGCUGCUCAUCGAAGUCUGCCAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCGC ------(((((((..(((((((.((((((..-..)))))--)....))))))).)))))))...........(((((...)))))((((((....))))))........ ( -38.50, z-score = -2.62, R) >droYak2.chr2L 9547982 90 + 22324452 ------ACUUUGAGCUGACAGGAUGGGGUUU-UUUGCC------------CUCAUCGAAGUCUGCCAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCAG ------....((.((.(((..((((((((..-...)))------------).))))...))).)))).....(((((...)))))((((((....))))))........ ( -28.60, z-score = -2.41, R) >droSec1.super_16 1281009 102 + 1878335 ------ACUUUGAGCUGGCAGCAUGUGGUUU-UUUUCCUCUGGCCGGCUUCUCAUCGAAGUCUGCCAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCAG ------........((((..((((((((...-....))..((((.((((((.....)))))).))))........)).))))...((((((....))))))....)))) ( -32.90, z-score = -2.62, R) >droSim1.chr2L 12918985 102 + 22036055 ------ACUUUGAGCUGGCAGCAUGUGGUUU-UUUUUCUCUGGCCGGCUUCUCAUCGAAGUCUGCCAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCAG ------........((((..((((...((..-........((((.((((((.....)))))).))))........)).))))...((((((....))))))....)))) ( -32.47, z-score = -2.56, R) >droWil1.scaffold_180708 6205419 107 + 12563649 UCUUCCUUCUCGCUCUUGUAUUCUUCUCUGUCUCUUUCACUCUGCGACACUGCAGUAAAGUCUGCCAUGUAAUUUGCAAUACAAACAGG-CAAGGACAACAAGUCCUU- ...........(((.(((((((......((((.(.........).))))..((((......))))............)))))))...))-)((((((.....))))))- ( -20.70, z-score = -1.35, R) >consensus ______ACUUUGAGCUGGCAGCAUGGGGUUU_UUUUUCUCUGGCCGGCUUCUCAUCGAAGUCUGCCAUAUAAUUUGCAAUGCAAACAGGACUCAUGUCCUGAAUCCCAG ......(((((((...(((.((....((........))....))..))).....)))))))...........(((((...)))))((((((....))))))........ (-11.60 = -13.33 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:58 2011