| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,122,303 – 13,122,402 |
| Length | 99 |
| Max. P | 0.756264 |
| Location | 13,122,303 – 13,122,402 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.48607 |
| G+C content | 0.35183 |
| Mean single sequence MFE | -17.17 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13122303 99 - 23011544 AUUCCGCAAAUGACGCUUACGUGAUUACAUAAAGACCCAUGAAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUCGAAACAAAAACCGGC----------------- .....(((..((((((...((((..............))))...((((((((.......))))))))....)))))))))...................----------------- ( -20.54, z-score = -1.79, R) >droSim1.chr2L 12915583 99 - 22036055 AUUCCGCAAAUGACGCUUACGUGAUUACAUAAAGACCCAUGAAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUCGAAACAAAAACCGGC----------------- .....(((..((((((...((((..............))))...((((((((.......))))))))....)))))))))...................----------------- ( -20.54, z-score = -1.79, R) >droSec1.super_16 1277491 99 - 1878335 AUUCCGCAAAUGACGCUUACGUGAUUACAUAAAGACCCAUGAAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUCGAAACAAAAACCGGC----------------- .....(((..((((((...((((..............))))...((((((((.......))))))))....)))))))))...................----------------- ( -20.54, z-score = -1.79, R) >droYak2.chr2L 9544348 99 - 22324452 AUUCCACAAAUGACGCUUACGUGAUUACAUAAAGACCCAUGAAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUCGAAACAAAAACCGGC----------------- .(((.....(((((((...((((..............))))...((((((((.......))))))))....)))))))......)))............----------------- ( -19.14, z-score = -1.73, R) >droEre2.scaffold_4929 14321104 99 + 26641161 AUUCCACAAAUGACGCUUACGUGAUUACAUAAAGACCCAUGAAAAGCGAUUUGAACUUGAAAUCGCCAAAUGCGUCAUGCAAUCGAAACAAAAACUGGC----------------- .(((.....(((((((...((((..............))))....(((((((.......))))))).....)))))))......)))............----------------- ( -19.44, z-score = -1.78, R) >droAna3.scaffold_12916 3864185 115 + 16180835 AUUCAACAAAUGACGGUUACGUGAUUACAUAAAGAUUCAU-AAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUUCAAACAACAGCCAGUACCAACGAAAAAGCUCC .(((.....((((((.(((.((((((.((....((.((((-....)))).)).....)).)))))))))...))))))...................((....)))))........ ( -16.90, z-score = 0.14, R) >droPer1.super_46 357490 99 + 590583 AUUCCACAAAUGACGCUUACGUGAUUACACAAAUGGCCGUAAAAAGUGAUUUGAACUUGAAAUUGCUAAAUGCGUCAUGCAAUUGAAACAAAUACACUC----------------- .(((.....(((((((....(((....)))...((((.((...((((.......))))...)).))))...)))))))......)))............----------------- ( -19.00, z-score = -1.45, R) >dp4.chr4_group4 828784 99 - 6586962 AUUCCACAAAUGACGCUUACGUGAUUACACAAAUGGCCGUAAAAAGUGAUUUGAACUUGAAAUUGCUAAAUGCGUCAUGCAAUUGAAACAAAUACACUC----------------- .(((.....(((((((....(((....)))...((((.((...((((.......))))...)).))))...)))))))......)))............----------------- ( -19.00, z-score = -1.45, R) >droWil1.scaffold_180708 6201069 85 - 12563649 ---AUGUAAAUUGCUGUUACGUGAUUACAUAAAAA-CCAUAAAAAGUGAUUUGAACUUGAAAUUGUUAAAUUCGUCAUGCAAUGUUGGU--------------------------- ---((((((.(..(......)..)))))))....(-(((......(((((..(((.((((.....)))).)))))))).......))))--------------------------- ( -13.02, z-score = -0.05, R) >droGri2.scaffold_15252 10159986 103 - 17193109 GUUAUACAAAUGGCGCUUACGUGAUUACAUAAAAAACCAUAAAAAGUGAUUUGAACUUGAAAUUGCUAAAAGCGUCAUGCAAUUGAAACAAAGCUAAAACAAC------------- .(((.....(((((((((..(..(((.((....(((.(((.....))).))).....)).)))..)...))))))))).....))).................------------- ( -17.20, z-score = -1.32, R) >droMoj3.scaffold_6500 26185110 90 - 32352404 -------------CGAUUACGUGAUUACAUAAAAAAAAUUAAAAAACCAUUUGAACUUGAAAACACAGAGAGCAUCUUGCAAUUGAAACAAAGUAAAAACAGC------------- -------------.......((..((((..........(((((......))))).................((.....))............))))..))...------------- ( -5.30, z-score = 1.07, R) >droVir3.scaffold_12963 6995325 101 - 20206255 GUUAUACAAAUGCCGCUUACGUGAUUACAUAAAAAACCAUAAAAAGCGAUUUGAACUUGAAAUUGCUAAAAGCGUCAUGCAAUUGAAACAAAGCAGAAAAU--------------- ......(((.((((((((..(((....)))..............((((((((.......))))))))..)))))....))).)))................--------------- ( -15.40, z-score = -0.74, R) >consensus AUUCCACAAAUGACGCUUACGUGAUUACAUAAAGACCCAUAAAAAGUGAUUUGAACUUGAAAUCGCUAAAUGCGUCAUGCAAUUGAAACAAAAACCGGC_________________ .........(((((((....(((....)))..............((((((((.......))))))))....)))))))...................................... (-11.17 = -11.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:57 2011