| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,100,575 – 13,100,671 |
| Length | 96 |
| Max. P | 0.928664 |
| Location | 13,100,575 – 13,100,671 |
|---|---|
| Length | 96 |
| Sequences | 9 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.97 |
| Shannon entropy | 0.10791 |
| G+C content | 0.41435 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -24.21 |
| Energy contribution | -23.96 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13100575 96 + 23011544 GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -27.50, z-score = -2.15, R) >droPer1.super_46 331945 96 - 590583 AUUGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -22.80, z-score = -1.06, R) >dp4.chr4_group4 803241 96 + 6586962 AUUGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -22.80, z-score = -1.06, R) >droAna3.scaffold_12916 3832570 96 - 16180835 AUUGGGAAGGCCUACAAUAAAUUUCAAGAAAAUUACGUUUGCACGCCGUUGGCGUACAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU (((.((((((((..((((((.((((((..((((.....(((.(((((...))))).))).....))))..)))))).)))))).)))))))).))) ( -29.80, z-score = -3.36, R) >droEre2.scaffold_4929 14297994 96 - 26641161 GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUACUGCGGUCUCUCGGGU .((((((.((((..((.(((.(((((...((((.....((.((((((...)))))).)).....))))...))))).))).)).)))))))))).. ( -26.40, z-score = -1.75, R) >droYak2.chr2L 9521644 96 + 22324452 GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -27.50, z-score = -2.15, R) >droSec1.super_16 1255765 96 + 1878335 GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -27.50, z-score = -2.15, R) >droSim1.chr2L 12892749 96 + 22036055 GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. ( -27.50, z-score = -2.15, R) >droWil1.scaffold_180708 6169786 96 + 12563649 AGUGAGACGGCCUACAAUAAAUUUCAUACAAAUUACGUUUUCAUUCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUCUGGGU ..(.(((.((((......................(((((..(.....)..)))))((((((((((......)))))...))))))))).))).).. ( -18.40, z-score = 0.04, R) >consensus GCCGAGACGGCCUACAAUAAAUUUCAUCCAAAUUACGUUUUCAUGCCGUUGGCGUGCAAUUUUCAUUUAAUUGAGGCUUAUUGCGGUCUUUCGGGU .((((((.((((..((((((.(((((...((((.....((.((((((...)))))).)).....))))...))))).)))))).)))))))))).. (-24.21 = -23.96 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:54 2011