| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,077,631 – 13,077,722 |
| Length | 91 |
| Max. P | 0.679233 |
| Location | 13,077,631 – 13,077,722 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 80.45 |
| Shannon entropy | 0.31256 |
| G+C content | 0.55745 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.67 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13077631 91 + 23011544 CCGUCUGCUACCCCUCCCUCCCCCCUGGAAAAAUACUGCCC-------AACCAACCAAAAGUUCUGUGGCAGCGUUUCCGAUUUCUGUGGCGACAGCU ..(((.(((((...............(((((....((((((-------(...(((.....))).)).)))))..)))))(....).)))))))).... ( -21.60, z-score = -1.97, R) >droSim1.chr2L 12867915 80 + 22036055 ------GCUACCCCUCACCCGC---UGGAAAAAUACUGCCC-------U--CCAUCCAAAGUUCUGGGGCAGCGUUUCCGAUUUCUGUGGCGACAGCU ------(((..(((.((.....---((((((....((((((-------(--..............)))))))..)))))).....)).)).)..))). ( -21.94, z-score = -0.79, R) >droSec1.super_16 1232734 80 + 1878335 ------GCUACCCCUCCCUCCC---UGGAAAAAUACUGCCC-------A--CCAUCCAAAGUUCUGGGGCAGCGUUUCCGAUUUCUGUGGCGACAGCU ------(((((...........---.(((((....((((((-------.--....(....).....))))))..)))))(....).)))))....... ( -20.10, z-score = -0.49, R) >droYak2.chr2L 9497722 89 + 22324452 ------GCUCUCGUCUGCCCCC---UGGAAAAAUACUGCCCCUUCCAUACUCCAUCCAAAGUUCUGGGGCAAAGUUUCCGAUUUCCGUGGCGACAGCU ------(((.(((((.......---((((((.....((((((......(((........)))...))))))...))))))........))))).))). ( -26.76, z-score = -2.74, R) >droEre2.scaffold_4929 14275367 80 - 26641161 ------GCUCUCGUCCGCUCCC---CGGAAAAAUACUGCCC---------UCCAUCCAAAGUUCUGGGGCAACGUUUCCGAUUUCUGUGGCGACAGCU ------(((.(((.((((....---((((((.....(((((---------(..............))))))...))))))......))))))).))). ( -27.44, z-score = -3.10, R) >consensus ______GCUACCCCUCCCUCCC___UGGAAAAAUACUGCCC_______A__CCAUCCAAAGUUCUGGGGCAGCGUUUCCGAUUUCUGUGGCGACAGCU ......(((.....((((.......((((((....((((((.........................))))))..))))))......))))....))). (-15.31 = -15.67 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:51 2011