| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,060,970 – 13,061,080 |
| Length | 110 |
| Max. P | 0.617565 |
| Location | 13,060,970 – 13,061,080 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.31440 |
| G+C content | 0.44290 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -24.62 |
| Energy contribution | -25.12 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13060970 110 - 23011544 GAAGAAACAAUCGGGCCCAAGCAAAUGGCAAACUUUGCGA------------------------GACUUAUCCGUAAAUUAAACUUGGAAAACAACCAAGUUUUGAUUGGACGGUGGGGAGCUCUAGCAGUGAU .........((((.((....(((((.(.....))))))((------------------------(.((((.((((.((((((((((((.......))))).)))))))..))))))))...)))..))..)))) ( -28.80, z-score = -1.40, R) >droEre2.scaffold_4929 14257474 125 + 26641161 GAAGGAACAAUCGAGCCCGAGCAAAUGGCAAACUUUGCCAGCAAUUGGUUAGACCAAGCAACAGGACUUAUCCGUAAAUUAGACUUAGAGAGCAGACGAGUUUUGAUUGCACGGUGGUAAGCUUU--------- ............((((((((.....(((((.....)))))....))))....((((.(((((((((((..((.((................)).))..))))))).))))....))))..)))).--------- ( -30.69, z-score = -1.00, R) >droSec1.super_16 1216478 133 - 1878335 GAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAACAACAGGACUUAUCCGUAAAUUAGACUUGG-AAACAACCAAGUUUUGAUUGGACGGUGGGGAGCUCUAGCAGUGAU .........((((.((....(((((.(.....))))))((((..((((.....)))).........((((.((((.((((((((((((-......))))).)))))))..))))))))..))))..))..)))) ( -34.80, z-score = -1.75, R) >droSim1.chr2L 12851201 133 - 22036055 GAAGAAACAAUCGAGCCCAGGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAGCAACAGGACUUAUCCGUAAAUUAGACUUGG-AAACAACCAAGUUUUGAUUGGACGGUGGGGAGCUCUAGCAGUGAU ............((((((..(((((.(.....))))))..((..((((.....))))))....)).((((.((((.((((((((((((-......))))).)))))))..))))))))..)))).......... ( -35.00, z-score = -1.22, R) >consensus GAAGAAACAAUCGAGCCCAAGCAAAUGGCAAACUUUGCGAGCAAUUGGUAAGACCAAGCAACAGGACUUAUCCGUAAAUUAGACUUGG_AAACAACCAAGUUUUGAUUGGACGGUGGGGAGCUCUAGCAGUGAU ............((((((..(((((.(.....))))))......((((.....))))......)).((((.((((.((((((((((((.......))))).)))))))..))))))))..)))).......... (-24.62 = -25.12 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:46 2011