| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,048,605 – 13,048,698 |
| Length | 93 |
| Max. P | 0.922897 |
| Location | 13,048,605 – 13,048,698 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 71.03 |
| Shannon entropy | 0.46109 |
| G+C content | 0.44674 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -16.30 |
| Energy contribution | -15.30 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13048605 93 + 23011544 UAAGAAAGGGAUCGAAUGAAGGGGAAAUGGACGGGGAAAACUGAGA--CAGAAUU--GACUGAGCAC-UUGGAAAUUGCCAGCAUUUCUCCAACAUUU .............(((((..(((((((((..(((......)))...--.......--..(((.(((.-.(....).)))))))))))))))..))))) ( -22.60, z-score = -2.11, R) >droSim1.chr2L 12838776 93 + 22036055 UAAGAAAGGGACCGAAUGAAGGGGAAAUGGACGGGGAAAACUGAGA--CAGAGUU--GACUGAGCAC-UUGGAAAUUGCCAGCAUUUCUCCAACAUUU .............(((((..(((((((((..(((......)))...--.......--..(((.(((.-.(....).)))))))))))))))..))))) ( -22.60, z-score = -1.55, R) >droSec1.super_16 1204147 93 + 1878335 UAAGAAAGGGACCGAAUGAAGGGGAAAUGGACGGGGAAAACUGAGA--CAGAGUU--GACUGAGCAC-UUGGAAAUUGCCAGCAUUUCUCCAACAUUU .............(((((..(((((((((..(((......)))...--.......--..(((.(((.-.(....).)))))))))))))))..))))) ( -22.60, z-score = -1.55, R) >droVir3.scaffold_12963 6907431 97 + 20206255 CAAAGUAUGCAAUAAAAAAGGCAAAAGUGCGCGCACGGCACAGGAAAUCAAACUUUGGAUUGACUUUGCCAGCUGCUGCUGGCACUUGAG-GACAUUU ((((((.(((..........)))...((((.(....)))))..........))))))......((((((((((....)))))))...)))-....... ( -25.70, z-score = -0.44, R) >consensus UAAGAAAGGGACCGAAUGAAGGGGAAAUGGACGGGGAAAACUGAGA__CAGAGUU__GACUGAGCAC_UUGGAAAUUGCCAGCAUUUCUCCAACAUUU .............(((((..(((((((((...................(((........)))......((((......)))))))))))))..))))) (-16.30 = -15.30 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:44 2011