| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,026,724 – 13,026,831 |
| Length | 107 |
| Max. P | 0.780953 |
| Location | 13,026,724 – 13,026,831 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.47 |
| Shannon entropy | 0.36916 |
| G+C content | 0.67931 |
| Mean single sequence MFE | -39.51 |
| Consensus MFE | -28.08 |
| Energy contribution | -28.01 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13026724 107 + 23011544 CUGGCGGAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCAUCGAAGACGAUGA ..............((((((((((..(....(((.((...(((((.....)))))...))..))).).))))))))))..............(((((....))))). ( -43.40, z-score = -1.63, R) >droSim1.chr2L 12817085 107 + 22036055 GAGGCGGAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGUGGAGGACGCCGAGGCGGACGCUGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAAGACGAUGA ....(((.((....((((((((((..(((((....((...(((((.....)))))...))..))))).)))))))))).............)).))).......... ( -45.53, z-score = -2.27, R) >droYak2.chr2L 9445699 93 + 22324452 --GGCGGAGGAUGAGGCUGCCGGCGGCGGUGGCGGUGG------------CGACGAUGUGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAUGACGAUGA --..((........((((((((((.(((.(.(((.((.------------...)).))).).)))...)))))))))).....(((((...))))).....)).... ( -39.80, z-score = -2.51, R) >droEre2.scaffold_4929 14223468 105 - 26641161 --GGCGGAGGAUGACGCUGCCGUCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCGGAGCCGGCGGCCGAUGAAGUGGAGGCCACUGAAGACGAUGA --(((((.(.....).)))))((((((.(((((..((..........(..(((....)))..).))..))).)).))))))..(((((...)))))........... ( -41.30, z-score = -1.17, R) >droAna3.scaffold_12916 3765753 98 - 16180835 -----GGCGGAUUA-GCUGGCGGUGGUGGUGGCGACGAUGCAGAACAG---GAUGAUGCGGAUGCAGAACCGGCAGCCGAUGAAUUGGACGCUAUCGAUGAUGCUGA -----(((......-)))((((....((((((((.((((.((.....(---(....(((((........)).))).))..)).))))..))))))))....)))).. ( -27.50, z-score = 0.21, R) >consensus __GGCGGAGGAUGAGGCUGCCGGCGGCGGUGGCGACGAUGUGGAGGAGGACGCCGAGGCGGACGCAGAGCCGGCGGCCGAUGAAGUGGAGGCCACCGAAGACGAUGA ....(((.((....((((((((((.(((.(.((..((.(((........))).))..)).).)))...)))))))))).............)).))).......... (-28.08 = -28.01 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:40 2011