| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,025,457 – 13,025,518 |
| Length | 61 |
| Max. P | 0.721036 |
| Location | 13,025,457 – 13,025,518 |
|---|---|
| Length | 61 |
| Sequences | 14 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 74.07 |
| Shannon entropy | 0.54147 |
| G+C content | 0.50700 |
| Mean single sequence MFE | -13.47 |
| Consensus MFE | -9.20 |
| Energy contribution | -9.61 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13025457 61 - 23011544 -----------CCCUUGUUUUCCCCAAAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------.((..((..(((((...((((.....)))).((.....)).....))))).))..)).... ( -15.20, z-score = -0.78, R) >droSim1.chr2L_random 493195 61 - 909653 -----------CCCUUGUUUUCCCCAAAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------.((..((..(((((...((((.....)))).((.....)).....))))).))..)).... ( -15.20, z-score = -0.78, R) >droSec1.super_16 1180887 61 - 1878335 -----------CCCUUGUUUUCCCCAAAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------.((..((..(((((...((((.....)))).((.....)).....))))).))..)).... ( -15.20, z-score = -0.78, R) >droYak2.chr2L 9444460 61 - 22324452 -----------CAAUUGUUUUUUCCCAAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------....((((((.........((((((...)))))).)))))).((((((....))))))... ( -13.00, z-score = -0.62, R) >droEre2.scaffold_4929 14222204 60 + 26641161 -----------CCCUUGUUCCA-UCCAAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------((..((((((.-.......((((((...))))))............))))))...)).... ( -11.95, z-score = 0.33, R) >droAna3.scaffold_12916 3764515 60 + 16180835 ------------UUCUAAUUUUCACCCAACAGCGGCAUUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG ------------..................((((((...))))))........((((((....))))))... ( -11.80, z-score = -0.61, R) >dp4.chr4_group4 703468 61 - 6586962 -----------UCCUUCUUCUAUAAUCAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------...................((((((...))))))........((((((....))))))... ( -11.80, z-score = -0.69, R) >droPer1.super_46 235523 61 + 590583 -----------UCCUUCUUCUAUAAUCAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------...................((((((...))))))........((((((....))))))... ( -11.80, z-score = -0.69, R) >droWil1.scaffold_180708 6067935 58 - 12563649 --------------CCUUCGUUUUAUCCACAGCGGCAUUGUCGCUUAAAGCAUUCCGGGGAUAUACGGAUCG --------------.....((((((.....((((((...))))))))))))..((((........))))... ( -14.60, z-score = -1.30, R) >droVir3.scaffold_12963 6881765 59 - 20206255 -----------UGCUUCUUCU--CAUCCACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------(((((.....--.......((((((...))))))..))))).((((((....))))))... ( -13.24, z-score = -0.62, R) >droMoj3.scaffold_6500 26059728 59 - 32352404 -----------UGCUUCUUCU--CACUUACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG -----------(((((.....--.......((((((...))))))..))))).((((((....))))))... ( -13.24, z-score = -1.03, R) >droGri2.scaffold_15252 10051808 72 - 17193109 UGCUUCUGGUCUUCUGCACGUGGCAACAACAGCGGCAUUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG (((((..(((...((((...((....))...)))).......)))..))))).((((((....))))))... ( -18.90, z-score = -0.44, R) >anoGam1.chr2R 57084657 56 + 62725911 ----------------CUCUCACGCUCCACAGAGACACUGUCGUCUGAAGCACAACGGACACGUUUUCAUUG ----------------.......(((...(((((((...))).)))).)))..((((....))))....... ( -10.10, z-score = 0.09, R) >triCas2.ChLG5 122176 54 + 18847211 ------------------CCCUUUUUUUACAGCGUCACUGUCGCCUGAAACACAGCGGUGAUAUACGCGUCG ------------------.............((((...(((((((...........))))))).)))).... ( -12.60, z-score = -1.21, R) >consensus ___________CCCUUCUUCUACCCUCAACAGCGGCACUGUCGCUUAAAGCAUUCCGGGGAUAUUCGGAUCG ..............................((((((...))))))........((((((....))))))... ( -9.20 = -9.61 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:39 2011