| Sequence ID | dm3.chr2L |
|---|---|
| Location | 13,017,792 – 13,017,891 |
| Length | 99 |
| Max. P | 0.654556 |
| Location | 13,017,792 – 13,017,891 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 61.90 |
| Shannon entropy | 0.75306 |
| G+C content | 0.50856 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -9.73 |
| Energy contribution | -11.29 |
| Covariance contribution | 1.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 13017792 99 - 23011544 CCCGAUGUGCAGCCGCAACAGCCGGCCGAGUCUGUGGUGGUCACCGAAUUAUCCGCAGAAGAGGUAUAUCGUUUUCGCAAACUUAAUGAAGCAACAAAA-- ..((((((((.(((((....).))))(...(((((((((((......)))).)))))))...))))))))).....((............)).......-- ( -26.60, z-score = -0.69, R) >droEre2.scaffold_4929 14214558 99 + 26641161 CCCGAGGAGCAGCCACCACAGCCGGCGGAGGCUGUUGUGGUCACCGAAUUAACCGCCGAAGAGGCA-AGUAUCUUAAGGAAGCAAGAAAAAAUGCAUAAA- ((..((((((.(((((.((((((......)))))).))))).............(((.....))).-.)).))))..))..(((........))).....- ( -31.40, z-score = -2.20, R) >droYak2.chr2L 9436865 100 - 22324452 CCCGAAGAGCAGCCACCACAGCCGGCGGAAGCUGUUGUGGUCACCGAAUUGUCCGCCGAGGAGGCA-AGUAUCUUAAUGAAGCAAAAAAAGAAUAUAUACA ........((.(((((((((((.(((....)))))))))))..........(((.....)))))).-....((.....)).)).................. ( -28.30, z-score = -1.90, R) >droSec1.super_16 1173301 99 - 1878335 CCCGAUGUGCAGCCACAACAGACGGCCGAGGCUGUGGUGGUCACCGAAUUAUCCGCAGAAGAGGUAUAUUGUUUUCGUAAACUUAAUGAAGCGACAAAU-- .....(((((......(((((...(((....((((((((((......)))).))))))....)))...)))))(((((.......))))))).)))...-- ( -21.70, z-score = 0.59, R) >droSim1.chr2L 12810742 79 - 22036055 CCUGAUGUGCAGCCGCAACAGCCGGCCGAGGCUGUGGUGGUCACCGAAUUAUCCGCAGAAGAGGUAUAUUGUUUUCGUA---------------------- (((..(.(((.(((((.((((((......)))))).)))))....((....)).))).)..)))...............---------------------- ( -23.80, z-score = -0.38, R) >droAna3.scaffold_12916 3756847 81 + 16180835 CCAGAAGAUCAGACGCACAAGCCGGUAGAGGAGCCAGUUGUGGCCGAAUUAUCCGCCGAAGAGGUG-AGUGUUUCAGAAAAA------------------- ...........((.((((..((((((......))).....((((.((....)).))))....))).-.)))).)).......------------------- ( -19.70, z-score = -1.24, R) >droVir3.scaffold_12963 6873061 83 - 20206255 ------CUGCCGCCACAUACCCCGUCUACAGACUUUGUUGUAACGGAGCUUUCCGCUGAAGAGGCA-AGCAUCUUUGUUAGCUAAAACAA----------- ------.(((.(((.......((((.(((((......)))))))))(((.....))).....))).-.)))...(((((......)))))----------- ( -17.70, z-score = -0.12, R) >consensus CCCGAUGUGCAGCCACAACAGCCGGCCGAGGCUGUGGUGGUCACCGAAUUAUCCGCAGAAGAGGUA_AGUGUUUUAGUAAACUAAAA_AA___________ ...........(((((.((((((......)))))).)))))...........((........))..................................... ( -9.73 = -11.29 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:38 2011