Locus 1681

Sequence ID	dm3.chr2L
Location	13,013,809 – 13,013,918
Length	109
Max. P	0.630357

overview

Window 9

Location	13,013,809 – 13,013,918
Length	109
Sequences	12
Columns	112
Reading direction	forward
Mean pairwise identity	73.32
Shannon entropy	0.58819
G+C content	0.45661
Mean single sequence MFE	-26.64
Consensus MFE	-13.94
Energy contribution	-13.88
Covariance contribution	-0.06
Combinations/Pair	1.37
Mean z-score	-0.88
Structure conservation index	0.52
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.29
SVM RNA-class probability	0.630357
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 13013809 109 + 23011544
UAGCGUGUCCAUCAGCGGAUCCUUGAACUCAUCGGGUGCGUCGGCGCAUUCAUCUUCAGUCUGUAGGUUGGUAACUGCAAGGGAAACGUUUGCAUUUGCAUUUCAAUCC---
..((((..(((((.((((((...((((......(((((((....)))))))...)))))))))).)).)))..))(((((((....).))))))...))..........--- ( -29.30, z-score =  -0.39, R)
>droGri2.scaffold_15252 10039349 100 + 17193109
CAGUGUAUCCAUUAGCGGAUCCUUAAACUCAUCGGGCGCAUCGGCGCAUUCAUCCUCAGUCUGUUGAUUUGAAACUGCAA-----UACAAAUUUACAAAAUCCAU-------
((((......((((((((((((...........))((((....))))...........)))))))))).....))))...-----....................------- ( -18.70, z-score =  -0.45, R)
>droMoj3.scaffold_6500 26047562 112 + 32352404
CAAUGUGUCCAUCAGUGGGUCCUUAAACUCAUCGGGCGCAUCGGCGCACUCAUCUUCAGUCUGUUGGUUGGAAACUGUAAAUAGACAUGGACCAAGAAAAUCCAAAUAAUAA
...((.(((((((.((((((......)))))).))((((....))))...........(((((((....(....)....))))))).))))))).................. ( -29.90, z-score =  -1.79, R)
>droVir3.scaffold_12963 6868822 102 + 20206255
AAGCGUAUCCAUAAGCGGAUCCUUAAACUCAUCUGGUGCAUCGGCACACUCAUCCUCAGUCUGUUGAUUUGAAACUGCAAGGAAACCAU----AGCUUCAGCAAAC------
(((.(.((((......))))))))............((((((((((.(((.......))).))))))).((((.(((...(....)..)----)).)))))))...------ ( -18.90, z-score =   0.47, R)
>droWil1.scaffold_180708 6056466 109 + 12563649
UAAAGUAUCCAUCAAGGGAUCCUUAAACUCAUCAGGUGCAUCGGCACACUCAUCUUCAGUCUGUUGAUUGGUUACUGCAAUUGCAAAUUGGUCAAAUACAAUGAAAUUU---
..(((.((((......)))).)))...........((((....)))).......((((.....(((((..(((..(((....))))))..)))))......))))....--- ( -23.80, z-score =  -1.35, R)
>droPer1.super_46 218694 99 - 590583
CAAGGUAUCCAUCAGCGGAUCCUUGAACUCGUCGGGGGCAUCAGCACAUUCAUCUUCAGUCUGUUGGUUGGUUACUGCAAAUACAAAAGGUA-AUUACCU------------
...((((.((((((((((((((((((.....))))))((....)).............))))))))).))).))))...........((((.-...))))------------ ( -26.50, z-score =  -1.93, R)
>dp4.chr4_group4 686287 99 + 6586962
CAAGGUAUCCAUCAGCGGAUCCUUGAACUCGUCGGGGGCAUCAGCACAUUCAUCUUCAGUCUGUUGGUUGGUUACUGCAAAUACAAAAGGUA-AUUACCU------------
...((((.((((((((((((((((((.....))))))((....)).............))))))))).))).))))...........((((.-...))))------------ ( -26.50, z-score =  -1.93, R)
>droAna3.scaffold_12916 3753212 109 - 16180835
CAGGGUGUCCAUAAGCGGAUCCUUGAACUCGUCCGGUGCAUCUGCGCACUCGUCCUCAGUCUGUUGGUUGGCAACUGCAAAUGGCAAAGGAAUGUUAGACUCUUGAAUG---
(((((.((((......))))))))).....(((((((((......)))).))((((..(((.....((.(....).))....)))..))))......))).........--- ( -29.50, z-score =   0.31, R)
>droEre2.scaffold_4929 14210527 103 - 26641161
GAGGGUGUCCAUCAGCGGAUCCUUGAACUCAUCGGGUGCGUCGGCGCAUUCAUCUUCAGUCUGUUGGUUGGUAACUGCAAAGGAAACAUUUG-AGUUGUAUUAU--------
........((((((((((((...((((......(((((((....)))))))...))))))))))))).)))(((((.(((((....).))))-)))))......-------- ( -29.30, z-score =  -0.80, R)
>droYak2.chr2L 9432721 103 + 22324452
GAGAGUGUCCAUCAGCGGAUCCUUGAACUCAUCGGGUGCGUCGGCGCAUUCAUCUUCAGUCUGUUGAUUGGUAACUGUAAAGGAAACAUUUG-AGUUGUAUUAU--------
..(((..(((......)))..))).((((((..(((((((....)))))))....((((((....))))))..........(....)...))-)))).......-------- ( -28.10, z-score =  -0.82, R)
>droSec1.super_16 1169298 109 + 1878335
UAGCGUGUCCAUCAGCGGAUCCUUAAACUCAUCGGGUGCGUCGGCGCAUUCAUCUUCAGUCUGUUGGUUGGUAACUGCAAGGGAAACGUUUGCAUUUGCAUUUCAAUCA---
..((((..(((((((((((..............(((((((....)))))))..(....))))))))).)))..))(((((((....).))))))...))..........--- ( -29.60, z-score =  -0.95, R)
>droSim1.chr2L 12806766 109 + 22036055
UAGCGUGUCCAUCAGCGGAUCCUUAAACUCAUCGGGUGCGUCGGCGCAUUCAUCUUCAGUCUGUUGGUUGGUAACUGCAAGGGAAACGUUUGCAUUUGCAUUUCAAUCA---
..((((..(((((((((((..............(((((((....)))))))..(....))))))))).)))..))(((((((....).))))))...))..........--- ( -29.60, z-score =  -0.95, R)
>consensus
CAGCGUGUCCAUCAGCGGAUCCUUAAACUCAUCGGGUGCAUCGGCGCAUUCAUCUUCAGUCUGUUGGUUGGUAACUGCAAAGGAAAAAUGUG_AUUUGCAUUUAAA______
....((..((((((((((((.......(......)((((....))))...........))))))))).)))..))..................................... (-13.94 = -13.88 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:37 2011