| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,998,600 – 12,998,672 |
| Length | 72 |
| Max. P | 0.741914 |
| Location | 12,998,600 – 12,998,672 |
|---|---|
| Length | 72 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 98.15 |
| Shannon entropy | 0.02551 |
| G+C content | 0.29630 |
| Mean single sequence MFE | -12.80 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12998600 72 + 23011544 AUAUUCAAAUGACCCUAUUGAAAAUGGGAGAAUUUGUAUGCAUACCAUACGAUUUUACUAUACAUUUUGUAA .(((..(((((.(((..........))).(((.(((((((.....))))))).)))......))))).))). ( -11.80, z-score = -1.40, R) >droSim1.chr2L 12790626 72 + 22036055 AUAUUCAAAUGACCCUAUUGCAAAGGGGAGAAUUUGUAUGCAUACCAUACGAUUUUACUAUACAUUUUGUAA .(((..(((((.((((........)))).(((.(((((((.....))))))).)))......))))).))). ( -13.30, z-score = -1.54, R) >droSec1.super_16 1154012 72 + 1878335 AUAUUCAAAUGACCCUAUUGCAAAGGGGAGAAUUUGUAUGCAUACCAUACGAUUUUACUAUACAUUUUGUAA .(((..(((((.((((........)))).(((.(((((((.....))))))).)))......))))).))). ( -13.30, z-score = -1.54, R) >consensus AUAUUCAAAUGACCCUAUUGCAAAGGGGAGAAUUUGUAUGCAUACCAUACGAUUUUACUAUACAUUUUGUAA .(((..(((((.((((........)))).(((.(((((((.....))))))).)))......))))).))). (-12.10 = -12.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:36 2011