| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,218,148 – 1,218,267 |
| Length | 119 |
| Max. P | 0.850887 |
| Location | 1,218,148 – 1,218,267 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.55 |
| Shannon entropy | 0.11456 |
| G+C content | 0.29918 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -22.44 |
| Energy contribution | -23.24 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1218148 119 + 23011544 UGAUUAUUUUCUACUGUUUGUAUUUGAUGAGUAAUGGAACCAAUGCAGAGUUGAUGAUUUCACAAAAUUUGAUCAACUAACUGGUUCGUUGGCUCAGAUAAUAAUUGUAAACAAAAA-UG .(((((((.(((((.....))).....(((((....((((((.(....((((((((((((....)))))..))))))).).))))))....))))))).)))))))...........-.. ( -25.10, z-score = -1.38, R) >droEre2.scaffold_4929 1263654 118 + 26641161 UGAUUAUUUUCUAU-GUUUGUAUUUGAUGAGUAAUGAAACCAAUGCAAACUUGAUGAAGUCACUAAAUUUGAUCAACUAGCUGGUUCGUUAGCUCAGAUAAUAGUUGAAAACAAAAA-UG .............(-((((.((((...(((((((((((.(((..((....(((((.((((......)))).)))))...))))))))))).)))))...)))).....)))))....-.. ( -22.50, z-score = -0.99, R) >droYak2.chr2L 1200164 120 + 22324452 UGAUUAUUUUCUAUUGUUUGUAUUUGAUGAGUAAUGAAACCAAUGCAUAGUUGAUGAAGUCACUGAAUUUGAUCAACUAACUGGUUCGUUAGCUCAGAUAAUAAUUGAAAACAAAAAAUG .............((((((.((((...(((((((((((.(((.....((((((((.((((......)))).))))))))..))))))))).)))))...)))).....))))))...... ( -28.30, z-score = -2.95, R) >droSec1.super_14 1176475 119 + 2068291 UGAUUAUUUACUAUUGUUUGUAUUUGAUGAGUAAUGGAACCAAUGCAAAGUUGAUGAAGUCACGAAAUUUGAUCAACUAACUGGUUCGUUGGCUCAGAUAAUAAUUGUAAACAAAAA-UG .............(((((((((((...(((((....((((((.(....(((((((.((((......)))).))))))).).))))))....)))))...))))....)))))))...-.. ( -27.40, z-score = -2.35, R) >droSim1.chr2L 1197344 119 + 22036055 UGAUUAUUUUCUAUUGUUUGUAUUUGAUGAGUAAUGGAACCAAUGCAAAGUUGAUGAAGUCACGAAAUUUGAUCAACUAACUGGUUCGCUGGCUCAGAUAAUAAUUGUAAACAAAAA-UG .............(((((((((((...(((((...(((((((.(....(((((((.((((......)))).))))))).).)))))).)..)))))...))))....)))))))...-.. ( -27.60, z-score = -2.36, R) >consensus UGAUUAUUUUCUAUUGUUUGUAUUUGAUGAGUAAUGGAACCAAUGCAAAGUUGAUGAAGUCACGAAAUUUGAUCAACUAACUGGUUCGUUGGCUCAGAUAAUAAUUGUAAACAAAAA_UG .............((((((.((((...(((((((((.(((((.(....(((((((.((((......)))).))))))).).)))))))))).))))...)))).....))))))...... (-22.44 = -23.24 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:54 2011