| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,993,508 – 12,993,616 |
| Length | 108 |
| Max. P | 0.557023 |
| Location | 12,993,508 – 12,993,616 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 90.70 |
| Shannon entropy | 0.16752 |
| G+C content | 0.35093 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.66 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12993508 108 - 23011544 CUCGGUUUUUUUUGUGGAAUA-UCCUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUGUGGGUAUUUAUACGGGUAUUA .................((((-.((.(((((..((((.(((....((((((....((((((......))))))......)))))).)))))))....))))))))))). ( -21.60, z-score = -1.30, R) >droEre2.scaffold_4929 14189843 103 + 26641161 ------CCCCUUUUCGGAUUACUCUUCGUGUUCACCCUUUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGCAUUGCGUUGUGGGUAUUUAUACGGGUAUUA ------.(((.....(((......)))((((..((((.......((((.......((((((......))))))....))))........))))....)))))))..... ( -18.96, z-score = -0.50, R) >droYak2.chr2L 9411831 106 - 22324452 ---CCCUUUUUUUUCGGAAUACUCUUCGUGUUCACCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUCUGGCAUUGCGUUGUGGGUAUUUAUACGGGUAUUA ---(((..........((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).)))))))........)))..... ( -22.20, z-score = -1.73, R) >droSec1.super_16 1148922 109 - 1878335 CCCGCUUUUUUUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUGUGGGUAUUUAUACGGGUAUUA ((((............((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).))))))).......))))..... ( -25.00, z-score = -2.36, R) >droSim1.chr2L 12785417 107 - 22036055 CCCGC--UUUUUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUGUGGGUAUUUAUACGGGUAUUA ((((.--.........((((((.....))))))((((.(((....((((((....((((((......))))))......)))))).))))))).......))))..... ( -25.00, z-score = -2.31, R) >consensus C_CGC_UUUUUUUUCGGAAUACUCUUCGUGUUCGCCCUAUAUUUGUGCAAUUAUUGUUUUUUGUUUUAAGAACUUUGGUAUUGCGUUGUGGGUAUUUAUACGGGUAUUA .................((((((...(((((..((((.(((....((((((((..((((((......))))))..))..)))))).)))))))....))))))))))). (-18.30 = -18.66 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:35 2011