| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,985,624 – 12,985,716 |
| Length | 92 |
| Max. P | 0.565229 |
| Location | 12,985,624 – 12,985,716 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.86 |
| Shannon entropy | 0.24085 |
| G+C content | 0.36608 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.89 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12985624 92 + 23011544 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA----A-GCCAAGG------ ----------.((((.....((((((((....))))))))..((((((.......)))))).......))))......................----.-.......------ ( -17.20, z-score = -1.16, R) >droSim1.chr2L 12777372 92 + 22036055 ----------AGUCAGUGCAUUUAGUCAAAAGUAAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA----A-GCCAAGG------ ----------.((((..........((((......))))...((((((.......)))))).......))))......................----.-.......------ ( -13.00, z-score = 0.04, R) >droSec1.super_16 1140049 92 + 1878335 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA----A-GCCAAGG------ ----------.((((.....((((((((....))))))))..((((((.......)))))).......))))......................----.-.......------ ( -17.20, z-score = -1.16, R) >droYak2.chr2L 9404385 92 + 22324452 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA-----AGCCGAGG------ ----------.((((.....((((((((....))))))))..((((((.......)))))).......))))......................-----........------ ( -17.20, z-score = -1.04, R) >droEre2.scaffold_4929 14182225 92 - 26641161 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCAAGCAGAGG----------- ----------.((((.....((((((((....))))))))..((((((.......)))))).......))))..............................----------- ( -17.20, z-score = -1.08, R) >droAna3.scaffold_12916 3727915 92 - 16180835 ----------AGUCACUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA-----AGCCAAGG------ ----------.((((.....((((((((....))))))))..((((((.......)))))).......))))......................-----........------ ( -16.90, z-score = -1.11, R) >dp4.chr4_group4 654375 103 + 6586962 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCAUCCAAAGCCAAAGCCAAGG ----------.((((.....((((((((....))))))))..((((((.......)))))).......)))).......................((...((....))...)) ( -17.40, z-score = -0.70, R) >droPer1.super_46 187799 103 - 590583 ----------AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCAUCCAAAGCCAAAGCCAAGG ----------.((((.....((((((((....))))))))..((((((.......)))))).......)))).......................((...((....))...)) ( -17.40, z-score = -0.70, R) >droWil1.scaffold_180708 6016956 103 + 12563649 CAUAGACUUCAGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACAGCACAAGCCA----AAGCUAAGG------ ..(((.(((..((..((((.((((((((....))))))))..((((((.......)))))).......................))))..))..----))))))...------ ( -23.60, z-score = -2.32, R) >droVir3.scaffold_12963 6834265 91 + 20206255 ----------AGCCAUUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACAGCAAAAGCCACGCCACG------------ ----------.((..((((.((((((((....))))))))..((((((.......)))))).......................))))..)).........------------ ( -18.80, z-score = -1.79, R) >droMoj3.scaffold_6500 26016569 99 + 32352404 ----------AGCCAUUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACAGCAAAAGCCACGCCACGCCACGCCA---- ----------.((..((((.((((((((....))))))))..((((((.......)))))).......................))))..)).................---- ( -18.80, z-score = -0.59, R) >consensus __________AGUCAGUGCAUUUAGUCAAAAGUGAUUGAAAAGGCAUUUUGUUAUAAUGCCAACUUAAUGACAACGAAAUUACACCAAAAGCCA____AAGCCAAGG______ ...........((((.....((((((((....))))))))..((((((.......)))))).......))))......................................... (-15.62 = -15.89 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:34 2011