| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,982,760 – 12,982,865 |
| Length | 105 |
| Max. P | 0.685248 |
| Location | 12,982,760 – 12,982,865 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.68 |
| Shannon entropy | 0.16411 |
| G+C content | 0.39111 |
| Mean single sequence MFE | -25.15 |
| Consensus MFE | -22.94 |
| Energy contribution | -22.96 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12982760 105 + 23011544 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGCGCAUAAAAAGGCAGCAGU------------ ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -25.70, z-score = -1.66, R) >droGri2.scaffold_15252 10009031 106 + 17193109 GAGCUUUAAUGCAAAAAUUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGCGCAUAAAAAGCCAGCAAG------------ (.(((((.((((.........((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))..))))))......------------ ( -25.50, z-score = -1.79, R) >droVir3.scaffold_12963 6831673 105 + 20206255 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCAGCGAUAAUCGUAAAA-GGAUAAUGGUGCUAAAAGCGCAUAAAAAGGCAGCGAG------------ ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -24.30, z-score = -1.49, R) >droMoj3.scaffold_6500 26013406 105 + 32352404 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGCCAAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGCGCAUAAAAAGGCGCCGAG------------ ..(((((.((((....-....((((((..(.....)..)))))).-((((((((((((.((.((......-)).)).))))))).)))))))))...)))))......------------ ( -31.00, z-score = -3.35, R) >droWil1.scaffold_180708 6014352 106 + 12563649 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAAAGGAUAAUGGCGCUAAAAGCGCAUAAAAAGUCAGCAGG------------ ((.((((.((((....-....((((((..(.....)..)))))).-(((((((((.(.((.(((........))).)).))))).)))))))))..))))))......------------ ( -23.20, z-score = -1.22, R) >droPer1.super_46 183900 117 - 590583 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGUGCUAAAAGCGCAUAAAAUGGCAGACAGAAAGGCAGCCGU ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))....((.....))..)))))...... ( -23.60, z-score = 0.35, R) >dp4.chr4_group4 650466 117 + 6586962 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGUGCUAAAAGCGCAUAAAAUGGCAGACAGAAAGGCAGCCGU ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))....((.....))..)))))...... ( -23.60, z-score = 0.35, R) >droAna3.scaffold_12916 3722338 105 - 16180835 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGAGCAUAAAAAGGCACCAGU------------ ..(((((.((((....-.....(((((..(.....)..)))))((-..(((((((.((.((.((......-)).)).)).))))))).))))))...)))))......------------ ( -22.50, z-score = -1.17, R) >droEre2.scaffold_4929 14179302 106 - 26641161 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUUUGCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAGAGCGCAUAAAAAGGCAGCAGU------------ ..(((((.((((....-....((((((..(.....)..))))))..(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -25.50, z-score = -1.17, R) >droYak2.chr2L 9401455 106 + 22324452 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUUUGCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAGAGCGCAUAAAAAGGCGGCAGU------------ ..(((((.((((....-....((((((..(.....)..))))))..(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -25.50, z-score = -0.92, R) >droSec1.super_16 1137296 105 + 1878335 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGCGCAUAAAAAGGCAGCAGU------------ ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -25.70, z-score = -1.66, R) >droSim1.chr2L 12774565 105 + 22036055 GAGCUUUAAUGCAAAA-UUUCAAUUGAACGUCAAACAGUCAAUUC-GCUUUAGCGGCGAUAAUCGUAAAA-GGAUAAUGGCGCUAAAAGCGCAUAAAAAGGCAGCAGU------------ ..(((((.((((....-....((((((..(.....)..)))))).-(((((((((.((.((.((......-)).)).)).)))).)))))))))...)))))......------------ ( -25.70, z-score = -1.66, R) >consensus GAGCUUUAAUGCAAAA_UUUCAAUUGAACGUCAAACAGUCAAUUC_GCUUUAGCGGCGAUAAUCGUAAAA_GGAUAAUGGCGCUAAAAGCGCAUAAAAAGGCAGCAGG____________ ..(((((.((((.........((((((..(.....)..))))))..(((((((((.(.((.(((........))).)).))))).)))))))))...))))).................. (-22.94 = -22.96 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:33 2011