| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,953,617 – 12,953,722 |
| Length | 105 |
| Max. P | 0.806267 |
| Location | 12,953,617 – 12,953,722 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 91.84 |
| Shannon entropy | 0.14051 |
| G+C content | 0.44357 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.06 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12953617 105 - 23011544 AUGAAAACGCACCGAGCUGAGUUCUCAUUUUCCCCGCCAAGAGGAGAGCC-------CGCUUUCCUUUUUUCUCUUAGCCGCGUAUUGCAAAAGUUUUCAAUUGUUUUUUUU .(((((((((((((.((((((.................((((((((((..-------..))))))))))....)))))))).))...))....)))))))............ ( -24.70, z-score = -1.83, R) >droSim1.chr2L 12743146 105 - 22036055 AUGAAAACGCACCGAGCUGAGUUCUCAUUUUCCCCGCCAAGUGGAAAGCC-------CGCUUUCCUUCAUUCGCUCAGCCGCGUAUUGCAAAAGUUUUCAAUUGUAUUUUUU .(((((((((((((.(((((((....((((........))))((((((..-------..)))))).......))))))))).))...))....)))))))............ ( -25.10, z-score = -2.10, R) >droSec1.super_16 1108247 105 - 1878335 AUGAAAACGCACCGAGCUGAGUUCUCAUUUUCCCCGCCAAGUGGAAAGCC-------CGCUUUCCUUCAUUCGCUCAGCCGCGUAUUGCAAAAGUUUUCAAUUGUAUUUUUU .(((((((((((((.(((((((....((((........))))((((((..-------..)))))).......))))))))).))...))....)))))))............ ( -25.10, z-score = -2.10, R) >droYak2.chr2L 9369072 112 - 22324452 AUGAAAACGCACCGAGCAGAGUUCUCAUUUUCCCCGCCAAGUGGAAAGCCGCCUCUUCGCUCUUCUUUUUUCGCUCAGCCGCGUAUUGCAAAAGUUUUCAAUUGUAUUUUUU .((((((((((..((((..((......((((((.(.....).))))))......))..)))).........(((......)))...)))....)))))))............ ( -23.40, z-score = -0.73, R) >droEre2.scaffold_4929 14147790 105 + 26641161 AUGAAAACGCACUGAGCAGACUUCUCAUUUUCCCCGCCAAGUGGAAAGCC-------CGCUUUCCAUCGUUCGCUCAGCCGCGUAUUGCAAAAGUUUUCAAUUGUAUUUUUU .(((((((((.((((((.((....))..............((((((((..-------..)))))))).....))))))..))(.....)....)))))))............ ( -27.80, z-score = -2.88, R) >consensus AUGAAAACGCACCGAGCUGAGUUCUCAUUUUCCCCGCCAAGUGGAAAGCC_______CGCUUUCCUUCAUUCGCUCAGCCGCGUAUUGCAAAAGUUUUCAAUUGUAUUUUUU .(((((((((...((((.((....))................(((((((.........))))))).......)))).)).((.....))....)))))))............ (-21.10 = -21.06 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:28 2011