| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,951,267 – 12,951,333 |
| Length | 66 |
| Max. P | 0.618658 |
| Location | 12,951,267 – 12,951,333 |
|---|---|
| Length | 66 |
| Sequences | 11 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 90.26 |
| Shannon entropy | 0.20913 |
| G+C content | 0.52778 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -17.28 |
| Energy contribution | -17.65 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12951267 66 - 23011544 ----UUUGGUAGUGUCA-GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----((((((....((.-.((((....)))).))((((((((((.........))).))))))))))))). ( -22.10, z-score = -1.73, R) >droSec1.super_16 1105867 66 - 1878335 ----UUUGGUAAUGUCA-AAAGCAACAGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----((((((((((((.-...(...).(((((((..............))))))))))))...))))))). ( -17.24, z-score = -1.32, R) >droYak2.chr2L 9366702 66 - 22324452 ----UUUGGUAGUGUCA-GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----((((((....((.-.((((....)))).))((((((((((.........))).))))))))))))). ( -22.10, z-score = -1.73, R) >droEre2.scaffold_4929 14145470 66 + 26641161 ----UUUGGUAGUGUCA-GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----((((((....((.-.((((....)))).))((((((((((.........))).))))))))))))). ( -22.10, z-score = -1.73, R) >droAna3.scaffold_12916 3693631 66 + 16180835 ----GUCGGUAGUGUCA-GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----(((((((.(((..-.((((....))))....))).))).)))).....((((((...)))))).... ( -22.60, z-score = -1.61, R) >dp4.chr4_group4 601477 70 - 6586962 UUUUUGGGGUAGUGUCA-GAGCCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ..(((((.......(((-(.(((...))))))).((((((((((.........))).))))))).))))). ( -21.70, z-score = -1.02, R) >droPer1.super_46 134443 70 + 590583 UUUUUGGGGUAGUGUCA-GAGCCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ..(((((.......(((-(.(((...))))))).((((((((((.........))).))))))).))))). ( -21.70, z-score = -1.02, R) >droWil1.scaffold_180708 6589328 69 + 12563649 -UCGUUCGGUAGUGUCA-GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG -.......(.((((((.-.((((....))))(....).......))))))).((((((...)))))).... ( -20.90, z-score = -0.74, R) >droVir3.scaffold_12963 6792419 64 - 20206255 -------GCUAGUGUCGCAAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAAGCGACAUUGUUGCCAAAG -------(((..((((....))))..))).(((.((((((((((.........))).))))))).)))... ( -25.10, z-score = -2.65, R) >droMoj3.scaffold_6500 25973664 67 - 32352404 ----UUUGCUAGUGUCGCAAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----......((((((((.((((....))))(....).....))))))))..((((((...)))))).... ( -26.10, z-score = -2.49, R) >droGri2.scaffold_15252 9976843 67 - 17193109 ----UUUGCUAGUGUCGUAAGGCAUCGGCGUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ----...((..(((((....)))))..)).(((.((((((((((.........))).))))))).)))... ( -27.00, z-score = -3.57, R) >consensus ____UUUGGUAGUGUCA_GAGGCAGCGGCCUGGAAACAAUGCGCGACAUUCAGGCGACAUUGUUGCCAAAG ..........((((((...((((....))))(....).......))))))..((((((...)))))).... (-17.28 = -17.65 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:27 2011