| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,933,282 – 12,933,375 |
| Length | 93 |
| Max. P | 0.783864 |
| Location | 12,933,282 – 12,933,375 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.79 |
| Shannon entropy | 0.22087 |
| G+C content | 0.50887 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -25.66 |
| Energy contribution | -26.55 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783864 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12933282 93 + 23011544 -----------GUGUGCUUUCCAGUGUAUUUCCGUUUGUGUGCGUUGCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGUGU -----------...((((((((....(((((((((((.((.(.(((....))).).)).))))))))))).(((((....)))))......))).))))).... ( -32.50, z-score = -1.54, R) >droAna3.scaffold_12916 3684265 103 - 16180835 CAUUUUUUCCAGUGUACCCAAGAG-GCGUUUCCGUUUGGGUACGUUGCUUAACACUCAAAAGCGGAAGUAAGCGUCGUUGGCUGCGGUUGAGGAUGAGUGGAGC ......((((...(((((((((.(-(.....)).)))))))))...(((((.(.(((((..((((.....(((...)))..))))..)))))).))))))))). ( -33.80, z-score = -1.65, R) >droEre2.scaffold_4929 14134379 93 - 26641161 -----------GUGUGUUUUCGAGUGUAUUUCCGUCUGUGUGCGUUGCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAAU -----------((.(((((((((.(.(((((((((...((.(.(((....))).).))...))))))))).(((((....)))))).))))))))).))..... ( -31.40, z-score = -1.59, R) >droYak2.chr2L 9356009 93 + 22324452 -----------GUGUGUUUUCGAGUGUAUUUCCGUUUGUGUGCGUUGCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGU -----------((.(((((((((.(.(((((((((((.((.(.(((....))).).)).))))))))))).(((((....)))))).))))))))).))..... ( -33.50, z-score = -2.36, R) >droSec1.super_16 1095239 93 + 1878335 -----------GUGUGUUUUCGAGUGUAUUUCCGUUUGUGUGCGUUGCUUAACACUCAAAAGCGGAAGUAAGCGCCAUGUGCUGCGGUCGAGGAUGAGCGGAGU -----------((.(((((((((.(((((((((((((.((.(.(((....))).).)).)))))))))).(((((...)))))))).))))))))).))..... ( -31.70, z-score = -1.77, R) >droSim1.chr2L 12729627 93 + 22036055 -----------GUGUGUUUUCGAGUGUAUUUCCGUUUGUGUGCGUUGCUUAACACUCAAGAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGU -----------((.(((((((((.(.(((((((((((.((.(.(((....))).).)).))))))))))).(((((....)))))).))))))))).))..... ( -33.90, z-score = -2.29, R) >consensus ___________GUGUGUUUUCGAGUGUAUUUCCGUUUGUGUGCGUUGCUUAACACUCAAAAGCGGAAGUAAGCGGCAUGUGCUGCGGUCGAGGAUGAGCGGAGU ...........(..(((((((((...(((((((((((.((.(.(((....))).).)).))))))))))).(((((....)))))..)))))))))..)..... (-25.66 = -26.55 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:26 2011