| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,932,487 – 12,932,588 |
| Length | 101 |
| Max. P | 0.939907 |
| Location | 12,932,487 – 12,932,588 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 69.30 |
| Shannon entropy | 0.58609 |
| G+C content | 0.35712 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -10.86 |
| Energy contribution | -10.53 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12932487 101 - 23011544 AUUGUAAGCAGAUUAACAGGAUAAAUAAAUAAAGUUAA-UUGGGCUGUAAAAGAUGUGA-GUCCGCAUCCCGAAAACAUCU-CACCUGUUUUUAUAUUUGCUUU .....((((((((.((((((.....(((......))).-.((((.(((....((((((.-...))))))......))).))-)))))))).....)))))))). ( -22.90, z-score = -2.21, R) >droSim1.chr2L 12728463 102 - 22036055 AUUGCAAGCAGAUUAACAGGAUGAAUAAAUAAAGUUAAUUUGGGCUGUAAAGGAUGUGA-GUCCGCAACCCGAAAACAACU-CACCUGUUUUUAUAUUUGCUUU .....((((((((.((((((.(((.........(((..((((((.(((...((((....-))))))).))))))...))))-)))))))).....)))))))). ( -27.30, z-score = -2.88, R) >droSec1.super_16 1094408 102 - 1878335 AUUGUAAGCAGAUUAACAGGAUGAAUAAAUAAAGUUAAUUUGGGCUGUAAAGGAUGUGA-GUCCGCAACCCGAAAACAACU-CACCUGUUUUUAUAUUUGCUUU .....((((((((.((((((.(((.........(((..((((((.(((...((((....-))))))).))))))...))))-)))))))).....)))))))). ( -27.20, z-score = -3.05, R) >droYak2.chr2L 9355168 103 - 22324452 AUUGCAAGCAGAUUAACGGGAUAAAUAAAUAAAGUUAAUUUUGCCAGUAAAACAUGUGAUCUCCACGGCCAAAUAACAUCC-CACCCGUUUUUAUAUUUGUUUU .....((((((((.((((((((......))...((((.(((.(((.(.....)..(((.....)))))).)))))))....-..)))))).....)))))))). ( -19.40, z-score = -1.54, R) >droEre2.scaffold_4929 14133598 103 + 26641161 GUGGCAAGCAUAUUAAGAGGAUGAAUAAAUAAAGGUAAUUCGGCCUGUAAAAGAUGUGA-GUGCACACCUGCACACCAGCCACACCUGUUUUUAUAUUUGUUUC (((((...((((((.(.(((.(((((...........))))).))).)....)))))).-(((((....)))))....)))))..................... ( -24.20, z-score = -0.83, R) >droGri2.scaffold_15252 9964653 97 - 17193109 GCUUUAGAUUAAGCAACAGAGUGCAUAAGCUGCUUAAAACUAAAGUAUUCAGCACCGAAUCUGUUCGACUAACAAAUGACC-CA-AUGCUCAGAGCUUU----- (((((((.(((((((.......((....)))))))))..)))))))....(((..((((....)))).........(((..-..-....)))..)))..----- ( -16.21, z-score = 0.34, R) >consensus AUUGCAAGCAGAUUAACAGGAUGAAUAAAUAAAGUUAAUUUGGGCUGUAAAAGAUGUGA_GUCCGCAACCCGAAAACAACC_CACCUGUUUUUAUAUUUGCUUU .....((((((((.((((((.............(((......))).........((((.....)))).................)))))).....)))))))). (-10.86 = -10.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:25 2011