| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,206,610 – 1,206,718 |
| Length | 108 |
| Max. P | 0.987646 |
| Location | 1,206,610 – 1,206,718 |
|---|---|
| Length | 108 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.44 |
| Shannon entropy | 0.73745 |
| G+C content | 0.44448 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -10.72 |
| Energy contribution | -11.19 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.29 |
| SVM RNA-class probability | 0.987646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1206610 108 + 23011544 --UUGGCC-UUUUCCCCCGGUGUUUGUCUUGGCCACUGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUCC-GUGCUAGCCAAUACAUA-- --(((((.-........((((.((..(((.(((....))))))..)).))))...((((((....(((((((((...---..))))))))).....)-))))).)))))......-- ( -37.40, z-score = -3.57, R) >droSim1.chr2L 1185925 108 + 22036055 --UUGGCC-UUUUUCCCCGGUGUUUGUCUUGGCCACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUCC-GUGCUAGCCAAUACAUA-- --(((((.-........((((.((..(((.(((....))))))..)).))))...((((((....(((((((((...---..))))))))).....)-))))).)))))......-- ( -39.50, z-score = -3.72, R) >droSec1.super_14 1165155 108 + 2068291 --UUGGCC-UUUUCCCCCGGUGUUUGUCUUGGCCACGGCCAGAUGAGAACCGAGCGGUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUCC-GUGCUAGCCAAUACAUA-- --(((((.-........((((.((..(((.(((....))))))..)).))))...((((((....(((((((((...---..))))))))).....)-))))).)))))......-- ( -39.50, z-score = -3.67, R) >droYak2.chr2L 1187949 109 + 22324452 --UUGGCCUUUUUCCCCCGCUGUUUGUCUUGGCCACGGCCAGCUGAGUGCCGAGCAGUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUUC-GGGCUGGCCAAUACAUA-- --((((((.....(((..((((((((...((((....))))((.....))))))))))..((...(((((((((...---..)))))))))....))-)))..))))))......-- ( -41.10, z-score = -2.79, R) >droEre2.scaffold_4929 1252410 109 + 26641161 --UUGGCCCUUUUCCCUCGCUGUUUGUCUUGGCCACGGCCAGAUGAGAGCCGAGCGGUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUUC-GGGCUGGCCAAUACAUA-- --(..((((....((((((((.((..(((.(((....))))))..)))).)))).))...((...(((((((((...---..)))))))))....))-))))..)..........-- ( -41.10, z-score = -2.81, R) >droAna3.scaffold_12916 4680370 99 + 16180835 ---------UUGGCCCUUUCUGUUUGUCUUGGCCAUGGCCAGAUGGGAGCGGCGAGAUAUGAUUGAUGUUGCAACAA---UUUUGCAGCAUAAUUUUUAGGCUAGCCAAUG------ ---------(((((((((.((((((((((.(((....)))))))..)))))).))).........(((((((((...---..)))))))))........))))))......------ ( -32.80, z-score = -1.67, R) >droWil1.scaffold_180708 2813518 110 + 12563649 UUUAUUUUUUUUUUUGGUUUGCCUCGUCUUGGCCAUCUGCGCGUUGCGUAUGAGUUAUAUGAUUGAUGUGCCAACAAAAUUUUUGUAGCAUAAUUUU-AGGCUGCCACUUG------ ..............((((..((((.....(((((((((((((...)))))..((((....)))))))).))))((((.....))))...........-)))).))))....------ ( -24.10, z-score = -0.69, R) >droVir3.scaffold_12963 7135137 91 + 20206255 -------------------CUGGCCUUUUGGGCCCUUUGU---UCGCGUAUCAGCCAGUUGAUUGAUGUUGCAACAAA--UUUUGCAGCAUAAUUUU-AGGCUGACUUUUAAAAAC- -------------------..((((.....))))......---.......((((((....(((((.((((((((....--..)))))))))))))..-.))))))...........- ( -28.30, z-score = -2.79, R) >droMoj3.scaffold_6500 28567725 105 - 32352404 ----------CCGGGCUUUUAUAUUGCGUUGGCCUGUGUUGCGUUGCGUAUUAGCAGUUUGAUUGAUACAACAACAAAA-UUCUGCUGCAUACUUUU-AGGCUGACUUUUAAAAAUC ----------....((.........))((..(((((.((......))((((((((((((((.(((......))))))).-..)))))).))))...)-))))..))........... ( -24.60, z-score = -0.62, R) >droGri2.scaffold_15252 10283369 109 + 17193109 ----CUUGGCGCUUGCAGGGCAAUUGUUUUGGCCUUUUGUGUGCUGCGUAUCAGCAAUUUGAUUGAUGUUGCAACAAA--UUUUGCAGCAUAAUUUU-GGGCUGACUUUUAAAAUC- ----...(((((....(((.(((.....))).))).....))))).....(((((.....(((((.((((((((....--..)))))))))))))..-..)))))...........- ( -31.80, z-score = -1.13, R) >consensus __UUGGCC_UUUUCCCCCGCUGUUUGUCUUGGCCACGGCCAGAUGAGAUCCGAGCGGUAUGAUUGAUGUUGCAACAA___UUUUGCAGCAUAAUUUC_GGGCUGGCCAAUACAUA__ ....................................................(((.....(((((.((((((((........))))))))))))).....))).............. (-10.72 = -11.19 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:54 2011