| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,909,442 – 12,909,516 |
| Length | 74 |
| Max. P | 0.559752 |
| Location | 12,909,442 – 12,909,516 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 81.86 |
| Shannon entropy | 0.30303 |
| G+C content | 0.63773 |
| Mean single sequence MFE | -30.03 |
| Consensus MFE | -21.39 |
| Energy contribution | -21.95 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559752 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12909442 74 + 23011544 CCGGGUCCUGCUUGGGUCCGGAGUUUGGGUCCGGGGAUGGAGUCCGGAGUCCGUAGUCCGUAGUCCGUGCAAUA ((((..((.((((.(...).))))..))..))))(.(((((.(.((((.(....).)))).).))))).).... ( -30.30, z-score = -1.36, R) >droEre2.scaffold_4929 14107068 71 - 26641161 CCGGGUCCUGCUUGGAUCCGGAGUUCGGGUCCGGGGAUGGAGCUGGA---CUGGAGUCCGUAGUCCGUGCAAUA ((((((((.....))))))))(((((((.((((....)))).)))))---))(((.(....).)))........ ( -31.90, z-score = -1.72, R) >droSec1.super_16 1069852 60 + 1878335 CCGGGUCCUACUUGGGUCCGGAGUUUGGGUCCGGGGAUGGUG--------------UCCGGAGUCCGUGCAAUA ((((..((.....))..)))).((.((((((((((.......--------------)))))).)))).)).... ( -27.70, z-score = -2.08, R) >droSim1.chr2L 12704125 74 + 22036055 CCGGGUCCUGCUUGGGUCCGGGGUUUGGGUCUGGGGAUGGGGUCCGGAGUCCGUAGUCCGUAGUCCGUGCAAUA ((((..((.....))..)))).((.((((.(((.((((..((.(....).))...)))).))))))).)).... ( -30.20, z-score = -0.89, R) >consensus CCGGGUCCUGCUUGGGUCCGGAGUUUGGGUCCGGGGAUGGAGUCCGG___CCGUAGUCCGUAGUCCGUGCAAUA ((((((((.....)))))))).......(..((((.(((((.(.((.....)).).)))))..))))..).... (-21.39 = -21.95 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:24 2011