| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,909,297 – 12,909,397 |
| Length | 100 |
| Max. P | 0.739310 |
| Location | 12,909,297 – 12,909,397 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.86 |
| Shannon entropy | 0.44017 |
| G+C content | 0.52535 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -22.81 |
| Energy contribution | -23.41 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12909297 100 - 23011544 UUGGGUUCCUCGGUUGGGU--ACGGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCAGCCAUUCGC ......(((......))).--.((((--(.(((........((((((((.....))))))))(((((.(((((((....)))).-.))).))))).)))))))). ( -32.50, z-score = -0.68, R) >droSim1.chr2L 12703968 100 - 22036055 UUGGGCUCCUCGGUUGGGU--ACGGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCUGCAGCCAUUCGC ...((((.(..(((..((.--.((..--(.(((((.(..(.((((((((.....)))))))).)..)..))))).)..))..))-...)))..).))))...... ( -31.40, z-score = -0.08, R) >droSec1.super_16 1069683 100 - 1878335 UUGGGCUCCUCGGUUGGGU--ACGGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAACGGGCC-AACACUCAGCAGCCAUUCGC ...((((.((.(((..((.--.((..--(.(((((.(..(.((((((((.....)))))))).)..)..))))).)..))..))-...))).)).))))...... ( -35.40, z-score = -1.24, R) >droYak2.chr2L 9331574 100 - 22324452 UUGGGUUCUUGGGUUGGGU--AUGGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCGGCCAUUCGC ...(((..((((((..(((--.....--..(((((.(..(.((((((((.....)))))))).)..)..))))).......)))-...))))))..)))...... ( -32.34, z-score = -0.78, R) >droEre2.scaffold_4929 14106931 101 + 26641161 -GGGGGCAGGGGUUUGGGUUCUUGGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCAGCCAUUCGC -.((..((((..(....)..))))..--))(((........((((((((.....))))))))(((((.(((((((....)))).-.))).))))).)))...... ( -32.80, z-score = -0.48, R) >droAna3.scaffold_12916 3658127 87 + 16180835 -------------UUGGGU--UUGAG--UCGGCACUUUGAAGGCGAUAUUGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCAGCCAUUCGC -------------......--..(((--(.(((........((((((((.....))))))))(((((.(((((((....)))).-.))).))))).))))))).. ( -30.30, z-score = -2.26, R) >dp4.chr4_group4 566923 90 - 6586962 --------UUGGGUCGGGU--CGGGG----GGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCAGCCAUUCGC --------((((((..(((--(.(.(----(((((.(..(.((((((((.....)))))))).)..)..))))))...).))))-...))))))........... ( -32.60, z-score = -1.64, R) >droPer1.super_46 102213 90 + 590583 --------UUGGGUCGGGU--CGGGG----GGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC-AACACUCAGCAGCCAUUCGC --------((((((..(((--(.(.(----(((((.(..(.((((((((.....)))))))).)..)..))))))...).))))-...))))))........... ( -32.60, z-score = -1.64, R) >droWil1.scaffold_180708 5952724 105 - 12563649 UUGCGUGUUUGGGGUACGGCUUUGGGUCUCGGCAUCGUGAUGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGCCCAAAUGGGCCAAACACUCAACAUUUAUUCGA (((.((((((((....(.(.(((((((....(((...((((((((((((.....))))))))))))..))))))))))).).)))))))).)))........... ( -35.50, z-score = -1.57, R) >droGri2.scaffold_15252 9957454 86 - 17193109 UUGGGUCCUU--AUCGGG---UUAGG--UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGU--------GAGCUCCAUCCCCCCCAACUAC---- (((((.....--...(((---...((--....(((.(..(.((((((((.....)))))))).)..)..))--------)....))...))))))))....---- ( -23.90, z-score = -0.40, R) >consensus UUGGGUUCUUGGGUUGGGU__AUGGG__UCGGCACUUUGAAGGCGAUAUCGUUAAUGUUGCCGUUGAUUGUGUCCAAAUGGGCC_AACACUCAGCAGCCAUUCGC ..............................(((........((((((((.....))))))))(((((.(((((((....))))...))).))))).)))...... (-22.81 = -23.41 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:23 2011