| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,905,137 – 12,905,210 |
| Length | 73 |
| Max. P | 0.531367 |
| Location | 12,905,137 – 12,905,210 |
|---|---|
| Length | 73 |
| Sequences | 12 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.93 |
| Shannon entropy | 0.35844 |
| G+C content | 0.46654 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -14.68 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12905137 73 - 23011544 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC-GGGGAC--------------------- (((((((((((((.....))))))).....((.((((((((((.....))))).))))).)).)).)-)))...--------------------- ( -22.50, z-score = -1.69, R) >droSim1.chr2L 12699751 73 - 22036055 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC-GGGGAC--------------------- (((((((((((((.....))))))).....((.((((((((((.....))))).))))).)).)).)-)))...--------------------- ( -22.50, z-score = -1.69, R) >droSec1.super_16 1065491 73 - 1878335 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC-GGGGAC--------------------- (((((((((((((.....))))))).....((.((((((((((.....))))).))))).)).)).)-)))...--------------------- ( -22.50, z-score = -1.69, R) >droYak2.chr2L 9326370 73 - 22324452 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC-GGGGAC--------------------- (((((((((((((.....))))))).....((.((((((((((.....))))).))))).)).)).)-)))...--------------------- ( -22.50, z-score = -1.69, R) >droEre2.scaffold_4929 14102935 73 + 26641161 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC-GGGGAC--------------------- (((((((((((((.....))))))).....((.((((((((((.....))))).))))).)).)).)-)))...--------------------- ( -22.50, z-score = -1.69, R) >droAna3.scaffold_12916 3653843 74 + 16180835 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUACGAGUGGCC-GAGGGAU-------------------- (((((((((((((.....)))))))...(((((.(((((((((.....))))).)))))))))))).-..)))..-------------------- ( -21.70, z-score = -1.63, R) >dp4.chr4_group4 561947 83 - 6586962 CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCCUGGGAGGUAGCCGGGU------------ ((((.((((((((.....))))))))...........((((((.(((((..((........))..)))))))))))..)))).------------ ( -28.20, z-score = -1.63, R) >droPer1.super_46 97090 82 + 590583 GCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCCUGGGAGGUA-CCGGGU------------ (((((((((((((.....)))))))).....(.((((((((((.....))))).))))).))))))((((......-))))..------------ ( -26.10, z-score = -1.20, R) >droWil1.scaffold_180708 5946379 94 - 12563649 -CCCCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGCCGUGUCUCGGGAGGAGAUGAUGCUGGGUGGGU -((((((((((((.....)))))))(((..((.((((((((((.....))))).))))).))....(((((.....)))))..))).))).)).. ( -27.60, z-score = -0.28, R) >droVir3.scaffold_12963 6762557 70 - 20206255 CCCGCCGGCGGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCAGCAGGGAAUUAUUAUGACUGGGCCGC------------------------- (((((.(((((((.....)))))))))......((((((.(((......))).))))))....)))....------------------------- ( -18.10, z-score = -0.37, R) >droGri2.scaffold_15252 9952874 70 - 17193109 CCCGCUGGCAUUUAAAUCAAUUGCCUCAAUUUGAUAAUAUUUCUGCAGGGAAUUAUUAUGAGUGGGCAAC------------------------- ((((((((((...........))))........((((((.((((....)))).)))))).))))))....------------------------- ( -18.70, z-score = -1.88, R) >droMoj3.scaffold_6500 25946548 65 - 32352404 CCCGCUGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCAGCUGGGAAUUAUUAUGACUGG------------------------------ (((((.(((((((.....)))))))))...((((.......))))..)))...............------------------------------ ( -15.70, z-score = -1.34, R) >consensus CCCGCCGGCAGUUAAAUCAAUUGCCGCAAUUUGAUAAUAUUUCACCAGGGAAUGAUUAUGAGUGGCC_GGGGAC_____________________ .((((((((((((.....)))))))).....(.((((((((((.....))))).))))).))))).............................. (-14.68 = -15.12 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:21 2011