Locus 1663

Sequence ID dm3.chr2L
Location 12,901,063 – 12,901,157
Length 94
Max. P 0.938840
window2276 window2277

overview

Window 6

Location 12,901,063 – 12,901,154
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 95.97
Shannon entropy 0.07440
G+C content 0.28388
Mean single sequence MFE -21.55
Consensus MFE -18.64
Energy contribution -18.12
Covariance contribution -0.53
Combinations/Pair 1.11
Mean z-score -2.44
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.45
SVM RNA-class probability 0.938840
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2L 12901063 91 - 23011544
GGGAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
...(((...(((((((((.(((..(((....((((((((((((....)))))))))))).....)))...)))..)))))))))...))). ( -20.90, z-score =  -2.20, R)
>droSim1.chr2L 12693789 91 - 22036055
GGCAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUAACCGUUACCGUUAUUGUUAUUGUUA
...(((...(((((((((.(((.(((.....((((((((((((....)))))))))))).....)))...)))..)))))))))...))). ( -20.80, z-score =  -2.00, R)
>droSec1.super_16 1061507 91 - 1878335
GGGAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUAACCGUUACCGUUAUUGUUAUUGUUA
...(((...(((((((((.(((.(((.....((((((((((((....)))))))))))).....)))...)))..)))))))))...))). ( -20.90, z-score =  -2.16, R)
>droAna3.scaffold_12916 3649692 91 + 16180835
GGAGGUGGAGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUAUUGUUACCGUUACCGUUAUUGUUAUUGUUA
((..((((..((((((((((((((...)))))))(((((((((....)))))))))..)))))))..))))..))................ ( -21.70, z-score =  -2.85, R)
>dp4.chr4_group4 557597 91 - 6586962
GGGAAUGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
((.(((((..(((..((((((...)))))).((((((((((((....))))))))))))...)))..))))).))................ ( -22.50, z-score =  -2.70, R)
>droPer1.super_46 92778 91 + 590583
GGGAAUGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
((.(((((..(((..((((((...)))))).((((((((((((....))))))))))))...)))..))))).))................ ( -22.50, z-score =  -2.70, R)
>consensus
GGGAACGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
...(((...(((((((((.(((.........((((((((((((....))))))))))))...........)))..)))))))))...))). (-18.64 = -18.12 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 12,901,063 – 12,901,157
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 93.76
Shannon entropy 0.11859
G+C content 0.29224
Mean single sequence MFE -22.02
Consensus MFE -18.64
Energy contribution -18.12
Covariance contribution -0.53
Combinations/Pair 1.11
Mean z-score -2.29
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.30
SVM RNA-class probability 0.923036
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2L 12901063 94 - 23011544
GUUGGGAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
......(((...(((((((((.(((..(((....((((((((((((....)))))))))))).....)))...)))..)))))))))...))). ( -20.90, z-score =  -1.89, R)
>droSim1.chr2L 12693789 94 - 22036055
GUUGGCAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUAACCGUUACCGUUAUUGUUAUUGUUA
..((((((....(((((((((.(((.(((.....((((((((((((....)))))))))))).....)))...)))..))))))))).)))))) ( -21.20, z-score =  -1.80, R)
>droSec1.super_16 1061507 94 - 1878335
GUUGGGAACUGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUAACCGUUACCGUUAUUGUUAUUGUUA
......(((...(((((((((.(((.(((.....((((((((((((....)))))))))))).....)))...)))..)))))))))...))). ( -20.90, z-score =  -1.83, R)
>droAna3.scaffold_12916 3649692 91 + 16180835
---GGAGGUGGAGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUAUUGUUACCGUUACCGUUAUUGUUAUUGUUA
---((..((((..((((((((((((((...)))))))(((((((((....)))))))))..)))))))..))))..))................ ( -21.70, z-score =  -2.85, R)
>dp4.chr4_group4 557597 94 - 6586962
CGGGGGAAUGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
(((...(((((..(((..((((((...)))))).((((((((((((....))))))))))))...)))..))))).)))............... ( -23.70, z-score =  -2.68, R)
>droPer1.super_46 92778 94 + 590583
CGGGGGAAUGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
(((...(((((..(((..((((((...)))))).((((((((((((....))))))))))))...)))..))))).)))............... ( -23.70, z-score =  -2.68, R)
>consensus
GUUGGGAACGGGGGCAAUAAUUUAAAUUAAAUUUGAAGUAAUGUUAUUGUUAACAUUGCUUUUACUGUUACCGUUACCGUUAUUGUUAUUGUUA
......(((...(((((((((.(((.........((((((((((((....))))))))))))...........)))..)))))))))...))). (-18.64 = -18.12 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:17 2011