| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,891,535 – 12,891,586 |
| Length | 51 |
| Max. P | 0.616147 |
| Location | 12,891,535 – 12,891,586 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 85.81 |
| Shannon entropy | 0.19425 |
| G+C content | 0.61036 |
| Mean single sequence MFE | -13.74 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12891535 51 - 23011544 -GGGGAAGGGGUGGUGCAGGGCAAGGACGGGAGUGAGAGAAAACACUAUCCC -......(((((((((..........((....)).........))))))))) ( -13.01, z-score = -1.81, R) >droSec1.super_16 1053359 52 - 1878335 GGGGAGGGGGGUGGUGCAUACCGAGGGAGGGAGUGAGAGAAAACACUAUCCC .......((((((((((((.((......))..)))........))))))))) ( -14.00, z-score = -1.44, R) >droSim1.chr2L 12685635 51 - 22036055 -GGGGAGGGGGUGGUGCAUGCCGAGUGAGGGAGUGAGAGAAAACACUAUCCC -......((((((((((((.((......))..)))........))))))))) ( -14.20, z-score = -1.57, R) >consensus _GGGGAGGGGGUGGUGCAUGCCGAGGGAGGGAGUGAGAGAAAACACUAUCCC .......((((((((((((.((.......)).)))........))))))))) (-11.17 = -11.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:14 2011