| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,205,033 – 1,205,123 |
| Length | 90 |
| Max. P | 0.998499 |
| Location | 1,205,033 – 1,205,123 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 72.37 |
| Shannon entropy | 0.48575 |
| G+C content | 0.48693 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.38 |
| SVM RNA-class probability | 0.998499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1205033 90 + 23011544 CAUCCCC-GGCACAUCAACAUCAUCAUCAUCAUCAGCUGCCACGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCAGUCUUCCAGGGAGCCU--------- ..((((.-((((.........................))))..(((((((((.....)))))))))((((.........))))))))....--------- ( -21.81, z-score = -1.67, R) >droPer1.super_8 863503 85 + 3966273 ---------------CUCCAUCGACGUCAUCAUCAUCUGCCAUGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCACUUUGCCUGGGCGUCUCCCUCCACA ---------------.......(((((............(((.(((.(((((((.((((.......)))).))))))).))))))))))).......... ( -27.10, z-score = -3.96, R) >dp4.chr4_group3 9664927 85 + 11692001 ---------------CUCCAUCGUCGUCAUCAUCAUCUGCCAUGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCACUUUGCCUGGCCGUCUCCCUCCACA ---------------.......................((((.(((.(((((((.((((.......)))).))))))).))))))).............. ( -25.90, z-score = -4.69, R) >droAna3.scaffold_12916 4678812 90 + 16180835 CAUCUUUAUCCUCAUCCUCAUC-CUGUCAUCAUCAUCUGCCAUGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCACUUUGCCGGAGAGCCU--------- ................(((.((-(((.((........)).)).(((.(((((((.((((.......)))).))))))).)))))))))...--------- ( -24.50, z-score = -2.92, R) >droEre2.scaffold_4929 1250870 87 + 26641161 CAUCCCC-UACACAUCC---UCAGCAUCACCAUCAGCUGCCACGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCAUUCUCUCAGGCAGCCU--------- .......-.........---...............((((((..(((((((((.....))))))))).(((......)))....))))))..--------- ( -22.30, z-score = -3.20, R) >droSim1.chr2L 1184363 87 + 22036055 CAUCCCC-GGCACAUCA---CCAUCAUCAUCAUCAGCUGCCACGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCAGUCUUCCAGGGAGCCU--------- ..((((.-((((.....---.................))))..(((((((((.....)))))))))((((.........))))))))....--------- ( -21.95, z-score = -1.54, R) >consensus CAUCCCC___CACAUCA_CAUCAUCAUCAUCAUCAGCUGCCACGGCUAAGUGAAUUCCAUUUAGCUUGGAUUUCACUCUGCCAGGGAGCCU_________ .......................................(((.(((((((((.....))))))))))))............................... (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:53 2011