| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,886,893 – 12,886,954 |
| Length | 61 |
| Max. P | 0.585370 |
| Location | 12,886,893 – 12,886,954 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 59.93 |
| Shannon entropy | 0.79673 |
| G+C content | 0.37269 |
| Mean single sequence MFE | -11.25 |
| Consensus MFE | -4.08 |
| Energy contribution | -4.05 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 2.17 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12886893 61 - 23011544 CAUUUUCAUUAUGCUGAUUUUACAGUAA--UGGGAAAUGACAAACAUUCCGUGGCACUUGCAU------- (((((((....(((((......))))).--..)))))))..............((....))..------- ( -11.30, z-score = -0.74, R) >droSim1.chr2L 12680951 61 - 22036055 CAUUUUCAUUAUGCUGAUUUUACAGUAA--UGGGAAAUGACAAACAUUCCGAGGCACUUGCAU------- (((((((....(((((......))))).--..)))))))..............((....))..------- ( -11.30, z-score = -1.15, R) >droSec1.super_16 1048739 61 - 1878335 CAUUUUCAUUGUGCUGAUUUUACAGUAA--UGGGAAAUGACAAACAUUCCGAGGCACUUGCAU------- (((((((....(((((......))))).--..)))))))..............((....))..------- ( -12.40, z-score = -1.01, R) >droYak2.chr2L 9309272 60 - 22324452 CAUUUUCAAUAUGUUAAUUUU-CAGUAA--UGGGAAAUGACAAACAUUCCGAGGCACUUGCAU------- ...........(((((.((..-((....--))..)).)))))...........((....))..------- ( -10.30, z-score = -1.07, R) >droEre2.scaffold_4929 14086469 60 + 26641161 CAUUUUCAAUAUGCUGAUUUU-CAGUAA--UGGGAAAUGACAAACAUUCCGAGGCACUUGCAC------- (((((((....(((((.....-))))).--..)))))))..............((....))..------- ( -12.10, z-score = -1.40, R) >droAna3.scaffold_12916 3638445 58 + 16180835 UAUUUUCCGUUUAAUUAUGGUGACUUUUUCUGUAAAUU--UAAUUGCCUUGCGUCACCAU---------- ................((((((((.......((((...--...)))).....))))))))---------- ( -10.70, z-score = -2.96, R) >dp4.chr4_group4 542102 70 - 6586962 UCUUUUUAUUAUAAUUAUUUUUCACUGAUUUGGAGGGGGGGAAAUGCGCAUUCUUGCCUGCCCCAUGGAU .................(((((((......)))))))((((....(.(((....))))..))))...... ( -12.80, z-score = 1.05, R) >droGri2.scaffold_15252 9936722 57 - 17193109 --GUUUCUUUCUGCAGCCCUUUGUGC----UCGGAUAUACAGAGAAUUUUCAGCCAACUGCAC------- --.........(((((....(((.((----(.(((.............)))))))))))))).------- ( -9.12, z-score = 0.19, R) >consensus CAUUUUCAUUAUGCUGAUUUUACAGUAA__UGGGAAAUGACAAACAUUCCGAGGCACUUGCAU_______ (((((((....(((((......))))).....)))))))............................... ( -4.08 = -4.05 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:13 2011