| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,884,190 – 12,884,286 |
| Length | 96 |
| Max. P | 0.916135 |
| Location | 12,884,190 – 12,884,286 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 75.69 |
| Shannon entropy | 0.48484 |
| G+C content | 0.53996 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -14.47 |
| Energy contribution | -16.41 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12884190 96 + 23011544 ----GUGCGUGCCCGGAUUCCUUAAUAUCCUACCGUACAUAUUCUCCUGCCUCACCAUUUGGCCCGUCACUCAUCAUCGGCUUGGUCAACUGGGCGUAUG ----((((((....((((........))))........................(((.((((((.(((..........)))..)))))).))))))))). ( -22.10, z-score = -0.52, R) >droSim1.chr2L 12678111 96 + 22036055 ----GUGCGUGCCCGGAUUCCUUAAUAUCCUACCGCACCUAUUCCCCUCCCUCGCCAUUUGGCCCGUCACUCAUCAUCGGCUUGGCCAACUGGGCGUAUG ----(((((.(...((((........))))..))))))..............((((..((((((.(((..........)))..))))))...)))).... ( -27.80, z-score = -2.30, R) >droSec1.super_16 1046010 96 + 1878335 ----GUGCGUGGCCGGAUUCCUUAAUAUCCUACCGCACCUAUUCUCUUUCCUCGCCAUUUGGCCCGUCACUCAUCAUCGACUUGGCCAACUGGGCGUAUG ----((((((((..((((........))))..)))).................(((..((((((.(((..........)))..))))))...))))))). ( -29.70, z-score = -3.38, R) >droYak2.chr2L 9306631 93 + 22324452 ----GUGCGUGCCCGGAUUUCUUAAUAUCCUACCGCACCUAUU---CUGCCUCGCCAUUUGGCCCGUCACUCAUCAUCGGCUUGGCCAACUGGGCGUAUG ----(((((.(...((((........))))..)))))).....---......((((..((((((.(((..........)))..))))))...)))).... ( -27.80, z-score = -1.87, R) >droEre2.scaffold_4929 14083934 93 - 26641161 ----GUGCGUGCCCGGAUUCCUUAAUAUCCUACCGCACUUAUU---CUCCCUCGCCGUUUGGCCCGUCACUCGUCAUCGGCUCGGCCAACUGGGCGUAUG ----(((((.(...((((........))))..)))))).....---......((((..((((((.(((..........)))..))))))...)))).... ( -27.40, z-score = -1.59, R) >droAna3.scaffold_12916 3635988 77 - 16180835 ----GUGCGUGCCCGGAUUUCUUAAUAUCCUUCCA-----ACU-------CUCGCC-------CUGUCACUCAUCAUCGGUUUGGCUAACGGGGCGUAUG ----...(((((..((((........)))).....-----...-------...(((-------((((.(..((.........))..).)))))))))))) ( -19.20, z-score = -1.03, R) >droWil1.scaffold_180708 5923326 84 + 12563649 UGUAGUGCGUGCCCAGGUUAUACAAUGUGGUCACAGAGCUAAAAA---------------GGAAACAAACUCAUCAUCAA-UUGACCAACUGGGCGUAUG ....((((..((((((...........((((((..((........---------------(....)..........))..-.)))))).)))))))))). ( -20.17, z-score = -0.75, R) >consensus ____GUGCGUGCCCGGAUUCCUUAAUAUCCUACCGCACCUAUU___CU_CCUCGCCAUUUGGCCCGUCACUCAUCAUCGGCUUGGCCAACUGGGCGUAUG ....((((((....((((........))))........................(((.((((((.(((..........)))..)))))).))))))))). (-14.47 = -16.41 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:11 2011