| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,874,529 – 12,874,580 |
| Length | 51 |
| Max. P | 0.698341 |
| Location | 12,874,529 – 12,874,580 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 82.18 |
| Shannon entropy | 0.28992 |
| G+C content | 0.40501 |
| Mean single sequence MFE | -12.55 |
| Consensus MFE | -6.81 |
| Energy contribution | -7.38 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12874529 51 + 23011544 ----CAAACGUUUUGAAAAGUGGUUCAAUGAUAAAGA-GCCACCGUUCGACAGUCA ----........(((((..(((((((.........))-)))))..)))))...... ( -13.70, z-score = -2.73, R) >droYak2.chr2L 9296927 53 + 22324452 --UAAAUGCGUGGUAAAAAGUGGUUCUAUGAUAAAGA-GCCACCAUUCGAGAGUCG --.................((((((((.......)))-)))))............. ( -10.80, z-score = -1.69, R) >droSec1.super_16 1036452 56 + 1878335 CAAAGAAACGUUCUGAAAAGUGGUUCUAUAAUAAAAAAGCCACCGUUCGACAGUCA ....((...(((..(((..((((((............))))))..))))))..)). ( -9.40, z-score = -1.54, R) >droSim1.chr2L 12668448 55 + 22036055 CAAAGAAACGUUGUGAAAAGUGGUUCUAUGAUAAAGA-GCCACCGUUCGACAGUCA .........((((((((..((((((((.......)))-)))))..))).)))).). ( -16.30, z-score = -3.51, R) >consensus __AAGAAACGUUGUGAAAAGUGGUUCUAUGAUAAAGA_GCCACCGUUCGACAGUCA .......((....((((..((((((((.......))).)))))..))))...)).. ( -6.81 = -7.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:10 2011