| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,866,683 – 12,866,757 |
| Length | 74 |
| Max. P | 0.843322 |
| Location | 12,866,683 – 12,866,757 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 92.52 |
| Shannon entropy | 0.14802 |
| G+C content | 0.57962 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -25.29 |
| Energy contribution | -26.82 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12866683 74 - 23011544 GUAUCGCCACUUGUUUGUGUCGCCUUUGCAGGACUCGUUGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((..(((((.(((..(((((......))))).))).....)))))..)))))))))).))... ( -32.90, z-score = -2.96, R) >droSim1.chr2L 12660216 74 - 22036055 GUAUCGCCACUUGUUUGUGUCGCCUUUGCAGGACUCGUUGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((..(((((.(((..(((((......))))).))).....)))))..)))))))))).))... ( -32.90, z-score = -2.96, R) >droSec1.super_16 1028477 74 - 1878335 GUAUCGCCACUUGUUUCUGUCGCCUUUGCAGGACUCGUAGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((.((((((.......))))))..(((.(((........))))))..)))))))))).))... ( -26.80, z-score = -1.36, R) >droYak2.chr2L 9288688 74 - 22324452 GUAUCGCCACUUGUUUGUGUCGCCUUUGCAGGACUCGUUGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((..(((((.(((..(((((......))))).))).....)))))..)))))))))).))... ( -32.90, z-score = -2.96, R) >droEre2.scaffold_4929 14066507 74 + 26641161 GUAUCGCCACUUGUUUGUGUCGCCUUUGCAGGACUCGUGGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((..(((((..(((....))).....((((...))))...)))))..)))))))))).))... ( -30.80, z-score = -1.91, R) >droAna3.scaffold_12916 3618602 68 + 16180835 GUAUGCCCCAUUGUU---GUCGCCGUUGCAGGACUCGUUGCAUGGCCAAUUGCAUGCUUAAGUGGCGAGGC--- ((((((......(((---(..(((((.((((......))))))))))))).))))))..............--- ( -17.00, z-score = 1.54, R) >consensus GUAUCGCCACUUGUUUGUGUCGCCUUUGCAGGACUCGUUGCACGGCCAAUUGCACGCUCAAGUGGCGAGGCAGC ((.((((((((((..(((((.(((..(((((......))))).))).....)))))..)))))))))).))... (-25.29 = -26.82 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:08 2011