| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,863,158 – 12,863,209 |
| Length | 51 |
| Max. P | 0.736830 |
| Location | 12,863,158 – 12,863,209 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 79.85 |
| Shannon entropy | 0.35956 |
| G+C content | 0.51187 |
| Mean single sequence MFE | -10.00 |
| Consensus MFE | -6.55 |
| Energy contribution | -6.55 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12863158 51 - 23011544 ACUA--ACCACCACUCUCCUCUACU-CCAGAA---UGUGCGUGGAGAAUGCGCUUAC ....--.....((.(((((.((((.-......---.))).).))))).))....... ( -9.50, z-score = -1.22, R) >droAna3.scaffold_12916 3615701 57 + 16180835 ACCACCACCGCCACCACACACUAUCCACAGAGCGCUGUGCGUUAAGAAUGCGCUUAC .............................((((((....(.....)...)))))).. ( -8.80, z-score = -0.40, R) >droEre2.scaffold_4929 14063129 50 + 26641161 ACUA--UUCGCCACCCUCCACUACU--CAGAA---UGUGCGUUGGGAAUGCGCUUAC ..((--..(((..(((.((((....--.....---.))).)..)))...)))..)). ( -8.80, z-score = -0.25, R) >droYak2.chr2L 9285362 50 - 22324452 ACUA--ACCACCACCCAUCCCUGCU--UAGAA---UGUGCGUUGAGAAUGCGCUUAC .(((--(.((...........)).)--)))..---.((((((.....)))))).... ( -6.50, z-score = -0.73, R) >droSec1.super_16 1025040 50 - 1878335 ACUA--ACCACCACUCUCCACUACU--AACAA---UGUGCGUGGAGAAUGCGCUUAC ....--.....((.((((((((((.--.....---.))).))))))).))....... ( -13.20, z-score = -3.75, R) >droSim1.chr2L 12656753 50 - 22036055 ACUA--ACCACCACUCUCCACUACU--CACAA---UGUGCGUGGAGAAUGCGCUUAC ....--.....((.((((((((((.--.....---.))).))))))).))....... ( -13.20, z-score = -3.41, R) >consensus ACUA__ACCACCACCCUCCACUACU__CAGAA___UGUGCGUGGAGAAUGCGCUUAC ....................................((((((.....)))))).... ( -6.55 = -6.55 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:07 2011