| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,857,680 – 12,857,773 |
| Length | 93 |
| Max. P | 0.646090 |
| Location | 12,857,680 – 12,857,773 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 69.71 |
| Shannon entropy | 0.55903 |
| G+C content | 0.34113 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -6.44 |
| Energy contribution | -7.63 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12857680 93 + 23011544 UCACAAAUCAAAUACCUUAAUACC-CAAAUCAGCAGAUACGUGAUUUGGCC--UACAUACAUACAUAUAUCAAAUGUACACUGCUUCUGAUUUACA------ ....((((((.............(-(((((((.(......)))))))))..--........(((((.......))))).........))))))...------ ( -13.30, z-score = -1.83, R) >droEre2.scaffold_4929 14058938 89 - 26641161 UCACAAAUCAAAUACCUUAAUACC-CAAAUCAGCAGAUACGUGAUUUGGGU----------UACAUAUAUCAAAUGUACACUGCUUCUGAUGCAUGUACA-- .....................(((-(((((((.(......)))))))))))----------.............((((((.(((.......)))))))))-- ( -21.20, z-score = -2.99, R) >droYak2.chr2L 9280820 85 + 22324452 UCACAAAUCAAAUACAUUAAUACC-CAAAUCAGCAGAUACGUGAUUUGGCU----------UACACAUAUCAAUUGUACACUGCUUCUGAUGUACG------ ............(((((((....(-(((((((.(......)))))))))..----------...(((.......)))..........)))))))..------ ( -13.10, z-score = -1.20, R) >droSec1.super_16 1020975 95 + 1878335 UCACAAAUCAAAUACCGUAAUACC-CAAAUCAGCAGAUACGUGAUUUGGCCAACACAUACAUAUGUAUAUCAAAUGUACACUGCUUUUGAUGUACA------ ................((.....(-(((((((.(......))))))))).....)).......(((((((((((.((.....)).)))))))))))------ ( -19.80, z-score = -2.23, R) >droSim1.chr2L 12652694 95 + 22036055 UCACAAAUCAAAUACCUUAAUACC-CAAAUCAGCAGAUACGUGAUUUGGCCAACACAUACAUAUGUAUAUCAAGUGUACACUGCUUCUGAUGUACA------ .......................(-(((((((.(......)))))))))..............((((((((((((.......)))..)))))))))------ ( -17.00, z-score = -1.21, R) >droGri2.scaffold_15252 9909803 101 + 17193109 UCGCCAUUAUUUUGUCGUAUUUUUGUAAAUCCGAAUAAGAAUUAUUUUAAUA-UCUAUGCGAAAGUUUAUUGACCUUACGACGCAAUUUACUGACUGCUGUU .............(((((((((((((........))))))).....((((((-.....((....)).))))))...))))))(((.((....)).))).... ( -15.00, z-score = -0.55, R) >consensus UCACAAAUCAAAUACCUUAAUACC_CAAAUCAGCAGAUACGUGAUUUGGCC___ACAUACAUACAUAUAUCAAAUGUACACUGCUUCUGAUGUACA______ .........................(((((((.........)))))))...............(((((((((...((.....))...)))))))))...... ( -6.44 = -7.63 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:06 2011