| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,853,153 – 12,853,235 |
| Length | 82 |
| Max. P | 0.977296 |
| Location | 12,853,153 – 12,853,235 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 83.11 |
| Shannon entropy | 0.31339 |
| G+C content | 0.46237 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -19.61 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12853153 82 - 23011544 AAAACUGGAAACCAGUUAAGGG-CC-CCGCCAAACUGGAUGCAUUCUUGCAUAUAAAUUAC-AUCCAGUGCAGGUUUGUCGAUCC------- ...((((((..((((((...((-(.-..))).))))))(((((....))))).........-.))))))................------- ( -24.30, z-score = -2.28, R) >droSim1.chr2L 12648206 83 - 22036055 AAAACUGGAAACCAGUUAAGGGCCC-CCGCCAAACUGGAUGCAUUCUUGCAUAUAAAUUAC-AUCCAGUGCAGGUUUGUCGCUCC------- ...((((((..((((((...(((..-..))).))))))(((((....))))).........-.))))))................------- ( -25.30, z-score = -2.41, R) >droSec1.super_16 1016491 83 - 1878335 AAAACUGGAAACCAGUUAAGGGCCC-CCGCCAAACUGGAUGCAUUCUUGCAUAUAAAUUAC-AUCCAGUGCAGGUUUGUCGCUCC------- ...((((((..((((((...(((..-..))).))))))(((((....))))).........-.))))))................------- ( -25.30, z-score = -2.41, R) >droYak2.chr2L 9276180 91 - 22324452 GCAACUGGAAACCAGUUAAGGGCCC-CCGCCAAACUGGAUGCAUUCUUGCAUAUAAAUUACAAUUCAGUGCAGGGCGCAGGUUUCUUGCUUC (((.(((((..((((((...(((..-..))).))))))(((((....)))))...........)))))))).....(((((...)))))... ( -29.30, z-score = -1.81, R) >droEre2.scaffold_4929 14054450 84 + 26641161 CAAACUGGAAACCAGUUAAGGGCCC-CCGCCAAACGGGAUGCAUUCUUGCAUAUAAAUUACAAUCCAGUGCAGGUUUGUAGCUCC------- ..((((((...))))))..((((.(-(((.....)))).((((..(((((((...............)))))))..)))))))).------- ( -27.16, z-score = -2.62, R) >droAna3.scaffold_12916 3607444 85 + 16180835 AAAGUUGAAAACCAGUUAAGGGUCUGGAGCGAAACUGGAUGCAUUCCUGCAUAUCAAUUACACUCGAGUGUAGUUGAACCGCUUU------- ...........((((........))))((((.......(((((....))))).((((((((((....))))))))))..))))..------- ( -25.60, z-score = -2.61, R) >consensus AAAACUGGAAACCAGUUAAGGGCCC_CCGCCAAACUGGAUGCAUUCUUGCAUAUAAAUUAC_AUCCAGUGCAGGUUUGUCGCUCC_______ ...((((((..((((((...(((.....))).))))))(((((....)))))...........))))))....................... (-19.61 = -19.95 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:03 2011