| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,851,787 – 12,851,882 |
| Length | 95 |
| Max. P | 0.892402 |
| Location | 12,851,787 – 12,851,882 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 89.22 |
| Shannon entropy | 0.18537 |
| G+C content | 0.53929 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -24.78 |
| Energy contribution | -25.30 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12851787 95 + 23011544 GACGAUGGCCAUGGACAUGGCGAUGACGAUGACUAGGACAGGAUCAGGA------GCAGGAGUGGACGAAGGGCUGCACUAGUUAGUCGUUCAUCAAACAU ....((((((((....)))))(((((((((((((((..(((..((....------((....)).))(....).)))..))))))).))).)))))...))) ( -29.50, z-score = -2.36, R) >droEre2.scaffold_4929 14053082 89 - 26641161 ------GACGAUGGCCAUGGCGAUGACGAUGACUGGGACAGGAUCAGGA------CCAGGAGUGGCCGAAGGGCCGCACUAGUUAGUCGUUCAUCAAACAU ------....(((((....))(((((((((..((((..(.......)..------))))..((((((....))))))........)))).)))))...))) ( -35.00, z-score = -3.35, R) >droYak2.chr2L 9274737 101 + 22324452 GACGAUGGCCAUGGCGAUGGCGUUGACGAGGAAUAGAACAGGAUCAGGAUCAGGAGCAGGAGUGGACGAAGGGCCGCACUAGUUAGUCGUUCAUCAAACAU ...(((((((((....)))))...(((((.........(..(((....)))..)(((.((.((((.(....).)))).)).)))..)))))))))...... ( -26.10, z-score = -0.65, R) >droSec1.super_16 1015097 95 + 1878335 GACGAUGGCCAUGGACAUGGCGAUGACGAUGACUGGGACAGGAUCAGGA------GCAGGAGUGGACGAAGGGCUGCACUAGUUAGUCGUUCAUCAAACAU ....((((((((....)))))(((((((((((((((..(((..((....------((....)).))(....).)))..))))))).))).)))))...))) ( -29.20, z-score = -1.91, R) >droSim1.chr2L 12646820 95 + 22036055 GACGUUGGCCAUGGACAUGGCGAUGACGAUGACUGGGACAGGAUCAGGA------GCAGGAGUGGACGAAGGGCUGCACUAGUUAGUCGUUCAUCAAACAU ...(((.(((((....)))))(((((((((((((((..(((..((....------((....)).))(....).)))..))))))).))).))))).))).. ( -29.90, z-score = -1.89, R) >consensus GACGAUGGCCAUGGACAUGGCGAUGACGAUGACUGGGACAGGAUCAGGA______GCAGGAGUGGACGAAGGGCUGCACUAGUUAGUCGUUCAUCAAACAU .......(((((....)))))(((((((((((((((.......((..(........)..))((((.(....).)))).))))))).))).)))))...... (-24.78 = -25.30 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:02 2011