| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,849,964 – 12,850,059 |
| Length | 95 |
| Max. P | 0.735983 |
| Location | 12,849,964 – 12,850,059 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.45 |
| Shannon entropy | 0.30784 |
| G+C content | 0.55685 |
| Mean single sequence MFE | -38.03 |
| Consensus MFE | -19.56 |
| Energy contribution | -20.59 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12849964 95 - 23011544 AUUGAGUUGCAAUGGACAUCGCCGGUCGCUUUUCCCC-UGGGUAAUUUCCAGGAGGAGCAGAAGACAACG-----GCCGGCCACGAUGACAAUUGCAGCGA .....((((((((...(((((((((((((((((((((-((((.....)))))).)))...))))....))-----))))))...))))...)))))))).. ( -43.70, z-score = -4.80, R) >droAna3.scaffold_12916 3604050 95 + 16180835 AUUGAGUUGCAUUGGACAGCAUCGGCGGCUUUUCCCCAGGGGCAAUUAUCAGGCUGAGCAGAGAAGACA------GCCAGCAACGAUGACAAUUGCAGCAA .....(((((((((.....(((((...(((..(((....))).........(((((...........))------))))))..))))).))).)))))).. ( -29.40, z-score = -1.24, R) >droEre2.scaffold_4929 14051282 95 + 26641161 AUUGAGUUGCAGUGGGCAUCGCCGGGCGCUUUUCCCC-UGGGUAAUUCCCAGCCGGAGGAGAAGACAAGG-----GCCAGCCACGAUGACAAUUGCAGCGA .....((((((((...(((((...(((.(((((((((-((((.....))))...)).)))))))......-----....))).)))))...)))))))).. ( -38.10, z-score = -1.75, R) >droYak2.chr2L 9272872 91 - 22324452 AUUGAGUUGCAGUGGGCAUCGUUGGGCGCUUUUCCCC-UGGGUAAUUUCCAGGCGCAGGAGAAGACAA---------CGACCACGAUGACAAUUGCAGCGA .....((((((((...((((((.((.(((((((((((-((((.....))))))....)))))))....---------)).))))))))...)))))))).. ( -39.10, z-score = -3.87, R) >droSec1.super_16 1013390 100 - 1878335 AUUGAGUUGCAAUGGGCAUCGCCGGGCGCUUUUCCCC-UGGGUAAUUUCCAGGCGGAGCAGAAGACAACGCAACGUCCGGCCACGUUGACAACUGCAGCGA .(((((((((((((......((((((((....(((((-((((.....)))))).)))((..........))..))))))))..))))).))))).)))... ( -40.00, z-score = -1.94, R) >droSim1.chr2L 12645080 100 - 22036055 AUUGAGUUGCAAUGGGCAUCGCCGGGCGCUUUUCCCC-UGGGUAAUUUCCAGGCGGAGCAGAAGACAACGCAAUGGCCGGCCACGUUGACAAUUGCAGCGA .((((((((((((((((...((((.((((((((((((-((((.....)))))).)))...))))....)))..))))..))).))))).))))).)))... ( -37.90, z-score = -1.13, R) >consensus AUUGAGUUGCAAUGGGCAUCGCCGGGCGCUUUUCCCC_UGGGUAAUUUCCAGGCGGAGCAGAAGACAACG_____GCCGGCCACGAUGACAAUUGCAGCGA .....((((((((...((..(((((...((..(((((.((((.....)))))).)))..))...............))))).....))...)))))))).. (-19.56 = -20.59 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:36:02 2011