| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,840,452 – 12,840,564 |
| Length | 112 |
| Max. P | 0.839047 |
| Location | 12,840,452 – 12,840,564 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.66 |
| Shannon entropy | 0.48261 |
| G+C content | 0.38567 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -13.39 |
| Energy contribution | -13.39 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12840452 112 - 23011544 AAACUGCACUUGCACUUCUACUGCUCGGCUAUUAUA-CAUACCCAAUCCCAUUUUUAACUACAGGGUAGCUAAAAGAAAACAGCUAU-----AUACACAUUGCUAAAGCAAUGUUCGC ....(((....)))........(((.(.((.(((..-..(((((...................)))))..))).))....))))...-----....(((((((....))))))).... ( -17.21, z-score = 0.03, R) >droEre2.scaffold_4929 14041776 96 + 26641161 --------------------UAUCUGUACUACUACU-ACUACCCAUUGCCAU-UCCCGCUACAGGGUACUGAAAAGAAAAGAGCUAUGUGGAGUACACAUUGCUAAAGCAAUGUUCGC --------------------.....(((((.((((.-..(((((...((...-....))....)))))((....))...........)))))))))(((((((....))))))).... ( -25.40, z-score = -2.20, R) >droYak2.chr2L 9263113 98 - 22324452 --------------UAACUGCAAUCACCAUUGUAUAUUAUACCCUAUGUCAU-UACAGCUACAGGGUACUGAAAAGAAAAGAGCUAU-----AUACACAUUGCGAAAGCAAUGUUCGC --------------.....((..........((((((..((((((..((...-....))...))))))((....)).........))-----))))(((((((....)))))))..)) ( -24.00, z-score = -2.80, R) >droSec1.super_16 1003999 112 - 1878335 UAAUUGCACUUGCACUUCUACUGAUGGGCUAUUAUA-CAUACCCAAUCCCAUAUUUAACUACAGGGUAGCUAAAAGAAAACAGCUAU-----AUACACAUUGCUAAAGCAAUGUUCGC .....((.((((....((....))((((.(((....-.)))))))................))))((((((..........))))))-----....(((((((....)))))))..)) ( -19.50, z-score = -0.37, R) >droSim1.chr2L 12635443 112 - 22036055 UAACUGCACUUGCUCUUCUACUGACAGGCUUUUAUA-CAUACCCAAUCCCAUAUUUAACUACAGGGUAGCGAAAAGAAAACAGCUAU-----AUACACAUUGCUAAAGCAAUGUUCGC .....((.((((.((.......))))))(((((...-..(((((...................)))))...)))))......))...-----....(((((((....))))))).... ( -20.31, z-score = -1.06, R) >consensus _AA_UGCACUUGC_CUUCUACUGAUAGGCUAUUAUA_CAUACCCAAUCCCAU_UUUAACUACAGGGUAGCGAAAAGAAAACAGCUAU_____AUACACAUUGCUAAAGCAAUGUUCGC .......................................(((((...................)))))............................(((((((....))))))).... (-13.39 = -13.39 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:59 2011