| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,810,536 – 12,810,677 |
| Length | 141 |
| Max. P | 0.924317 |
| Location | 12,810,536 – 12,810,677 |
|---|---|
| Length | 141 |
| Sequences | 5 |
| Columns | 150 |
| Reading direction | forward |
| Mean pairwise identity | 79.53 |
| Shannon entropy | 0.35942 |
| G+C content | 0.38694 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -20.21 |
| Energy contribution | -20.95 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12810536 141 + 23011544 UACUAAAA-AUACACUGAUUGAUUUCCUA-------AAAGAUUAAAAAUCAAUCGAGCUUCAGAUCUUAAGAGAUUUCCAA-CACCCUAGUGCUGAAUAUAUUCACGGAUACACACUGAGCAAGGUAUUGAGUACAGCCUCGAACUGCCU ........-......((((((((((..((-------(....))).)))))))))).(((.(((((((....)))).(((..-(((....))).((((....)))).)))......)))))).((((((((((......)))))..))))) ( -26.90, z-score = -1.51, R) >droEre2.scaffold_4929 14011964 108 - 26641161 ---------------------------------------AAGUACAAUGUAGC--AGCUUCAGAUCUGCACAGAUUUGGAA-CACCCUAGUGCUUAAUGUACUCAUGGAUACACACUAAGCCAGGUAUUGAGCACAGCCUCGAACUGCCU ---------------------------------------............((--((.(((((((((....))))))))).-.......(((((((..(((((..(((............))))))))))))))).........)))).. ( -26.70, z-score = -0.40, R) >droYak2.chr2L 9232082 150 + 22324452 UAAAAAAAUAUAUACUGAAUGAUUUCCUAUGUCCCAAGAGAUUAAAAAUCAUUCAAGCUUCAGAUCUUUACAGAUUUCCGAGCACCCUAGUGCUUAAUAUAUUCAUGGAUACACACUAAGCAAUGUAUUGAGCACAGCCUCGAACUGCCU ...............((((((((((...((.((....)).))...)))))))))).((((.((((((....))))))..))))......(((((((((((((((.(((.......))).).))))))))))))))............... ( -35.10, z-score = -3.83, R) >droSec1.super_16 974049 141 + 1878335 UAAUAAAA-GUACACUGAUUGAUUUCCUA-------AAAGAUUAAAAAUCAAUCGAGCUUCAGAUCUUAAGAGAUUUCCAA-CACCCUAGUGCUUAAUAUAUUCACGGAUACACACUGAGCCAGGUAUUGAGCACAGCCUCGAACUGCCU .......(-((.(...(((((((((..((-------(....))).)))))))))(((((..((((((....))))))....-.......(((((((((((.((((.(........)))))....))))))))))))).)))).))).... ( -29.40, z-score = -2.21, R) >droSim1.chr2L 12600791 141 + 22036055 UAAUAAAA-GUACACUGAUUGAUUUCCUA-------AAAGAUUAAAAAUCAAUCGAGCUUCAGAUCUUAAGAGAUUUCCAA-CACCCUAGUGCUUAAUAUAUUCACGGGUACACACUGAGCCAGGUAUUGAGCACAGCCUCGAACUGCCU .......(-((.(...(((((((((..((-------(....))).)))))))))(((((..((((((....))))))....-.......(((((((((((.......(((.(.....).)))..))))))))))))).)))).))).... ( -30.30, z-score = -1.91, R) >consensus UAAUAAAA_AUACACUGAUUGAUUUCCUA_______AAAGAUUAAAAAUCAAUCGAGCUUCAGAUCUUAAGAGAUUUCCAA_CACCCUAGUGCUUAAUAUAUUCACGGAUACACACUGAGCCAGGUAUUGAGCACAGCCUCGAACUGCCU ...............((((((((((....................)))))))))).(((..((((((....))))))............(((((((((((...(.(((.......))).)....))))))))))))))............ (-20.21 = -20.95 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:52 2011