| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,808,952 – 12,809,068 |
| Length | 116 |
| Max. P | 0.843062 |
| Location | 12,808,952 – 12,809,068 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Shannon entropy | 0.48149 |
| G+C content | 0.42083 |
| Mean single sequence MFE | -21.69 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12808952 116 - 23011544 GACCUAUCCAC-UUUUUUUGACUCCGAACCAUUUUGCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCU .......((((-....((((....)))).......((((.......))))..................))))(((.(((((..((.((((((.....)))))).)).))))).))). ( -23.40, z-score = -1.88, R) >droSim1.chr2L 12599204 110 - 22036055 GACCUCUCCAAUUUUUUUUCCUUCCGAA-------GCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCU .......(((.............(.(((-------((((.......))))))).)..............)))(((.(((((..((.((((((.....)))))).)).))))).))). ( -25.43, z-score = -2.83, R) >droSec1.super_16 972459 109 - 1878335 GACCUCUCCAA-UUUUUUUCCUUCCGAA-------GCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCU .......(((.-...........(.(((-------((((.......))))))).)..............)))(((.(((((..((.((((((.....)))))).)).))))).))). ( -24.97, z-score = -2.67, R) >droYak2.chr2L 9230479 116 - 22324452 GACCUACCCAA-UUUUUUCAUUACCAAAGCAUUUUGCUGCCGCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCU ......((((.-........((((..((((.....((....)).....))))..))))...........))))...(((((..((.((((((.....)))))).)).)))))..... ( -22.25, z-score = -1.63, R) >droEre2.scaffold_4929 14010438 116 + 26641161 GACCUACCCCA-UUUUUUCAUUACCCAGCCAUUUUGCGCCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUAGUCAUGCCAUCU .......((((-(..............((......))((.........))..................)))))...(((((.(...((((((.....))))))..).)))))..... ( -16.80, z-score = -0.27, R) >droGri2.scaffold_15252 9856091 98 - 17193109 GACAGAGCUGCAGUUUUUAGCUCU-----------ACUGCUUUUUCUUGUU------ACUCUUACUUAGAGUUAAUAUAAAUAAAUGAUUUU--UUUUCAAUUUUGUUAAGCUUUCU ...(((((((.......)))))))-----------...((((.....((((------(((((.....)))).)))))..(((((((((....--...)))..))))))))))..... ( -17.30, z-score = -0.70, R) >consensus GACCUAUCCAA_UUUUUUUACUUCCGAA_______GCGGCCUCUUUCCGCUUCCGUAACUCUUUUCCCGUGGGAUUGCAUGUCCAUGAUAUGGACUUUAUAUCUUGUCAUGCCAUCU ...................................((((.......)))).....................((((.(((((.(...((((((.....))))))..).))))).)))) (-11.53 = -11.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:51 2011