| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,193,376 – 1,193,467 |
| Length | 91 |
| Max. P | 0.866645 |
| Location | 1,193,376 – 1,193,467 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 60.26 |
| Shannon entropy | 0.74289 |
| G+C content | 0.36454 |
| Mean single sequence MFE | -13.69 |
| Consensus MFE | -5.15 |
| Energy contribution | -5.00 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1193376 91 - 23011544 ------------------GCAUUGUCCACUCGGCGCCAAAUAACCGUGUCAAAUAUUGCUAUAUAGA---GGGAGCAACAUGACACUUUUAGCUCAAAACCAGAGCCAAAAU------------ ------------------...((((((.((((((((.........)))))..((((....)))).))---)))).)))........((((.((((.......)))).)))).------------ ( -17.60, z-score = -0.72, R) >droSim1.chr2L 1172786 91 - 22036055 ------------------GCAUUGUCCACUCGGCGCCAAAUGACCGUGUCAAAUAUUGCUAUAUAGA---AGGAGCAACAUGGCACUUUUAGCUCACAACCAGAGCCAAAAU------------ ------------------(((.(((..((.(((((.....)).))).))...))).)))....((((---((..((......)).))))))((((.......))))......------------ ( -17.80, z-score = -0.02, R) >droSec1.super_14 1153412 91 - 2068291 ------------------GCAGUGUCCACUCGGCGCCAAAUAACCGUGUCGAAUAUUGCUAUAUAGA---AGGAGCAACAUGACACUUUUAGCUCACAACCAGAGCCAAAAU------------ ------------------..((((((...(((((((.........)))))))...(((((.......---...)))))...))))))(((.((((.......)))).)))..------------ ( -22.30, z-score = -2.25, R) >droYak2.chr2L 1173790 98 - 22324452 -------ACAUUGUCCACUCA----GCACUCAGCGCCAAAUGACCGUGUCAAAUAUUGCUAUAUAGC---AGUGGCAACAUGACACUUUUAGCUCAAAACCAAAGCCAAAAU------------ -------.....(((......----((.....)).......))).((((((...((((((....)))---)))(....).))))))((((.(((.........))).)))).------------ ( -18.02, z-score = -0.76, R) >droEre2.scaffold_4929 1239912 102 - 26641161 -------ACAUUGUCCACUCAUUGUCCACUCAGCGCCAAAUAACCGUGUCAAAUAUUGCUAUAUAGA---AGCAGCAACAUGACACUUUUAGCUCAAAAGCACAGCCAAAAC------------ -------(((.((......)).))).......((...........((((((....(((((.......---))))).....)))))).....(((....)))...))......------------ ( -15.60, z-score = -0.56, R) >droAna3.scaffold_12916 4665603 86 - 16180835 ---------------CCAGCGUCAACAACAUAG--CCAAAUAACCGUGUCAAAUAUUUCUAUAUAGA---AAGAACAACAUGACACUUUUAGCUCACAACCAAAAU------------------ ---------------..(((((.....))....--..........((((((.....((((.......---.)))).....)))))).....)))............------------------ ( -10.40, z-score = -2.30, R) >dp4.chr4_group3 9647205 101 - 11692001 AACAUUUCGAAAAUAAUUAUUACAACAACCUAA--ACUAAAAACCGUGUCAAAUAUUUCUAUAUAGA---AAGAGCAACAUGACACUUUAAGCUCGCAACCAAAAC------------------ .................................--..........((((((....(((((....)))---))........))))))....................------------------ ( -8.70, z-score = -1.15, R) >droPer1.super_8 846039 101 - 3966273 AACAUUUCGAAAAUAAUUAUUACAACAACCUAA--ACUAAAAACCGUGUCAAAUAUUUCUAUAUAGA---AAGAGCAACAUGACACUUUAAGCUCGCAACCAAAAC------------------ .................................--..........((((((....(((((....)))---))........))))))....................------------------ ( -8.70, z-score = -1.15, R) >droWil1.scaffold_180708 2793328 81 - 12563649 ------------------AUAGUCUUUAAUUAAAAAUCAAAAACCGUGUCAAAUAUUUCUAUAUAGAAACAACAGCAACAUGACACUUG-------AAACCAAAAU------------------ ------------------...........................((((((....(((((....)))))(....).....))))))...-------..........------------------ ( -6.80, z-score = -0.87, R) >droMoj3.scaffold_6500 3804056 85 - 32352404 -------------------------------GCACGU-AAAAACCGUGUCAAAUAUUUCUAAAUAGA---AAUCGCAAAAUGACACUUUUA----AUAGCUAAAGCUGCGAUUCGGCCAAAAAC -------------------------------((.((.-.......((((((...((((((....)))---))).......)))))).....----.((((....)))).....))))....... ( -14.00, z-score = -1.31, R) >droVir3.scaffold_12963 13086044 96 + 20206255 ----------------UAAUUAUCACGAGCCGCACACAAAAAACCGUGUCAAAUAUUUCUAAAUAGA---AACCACAACAUGACACUUU-------UAGCUAAA-CUGAGACUCUACCAAAAU- ----------------..........(((................((((((....(((((....)))---))........))))))(((-------(((.....-))))))))).........- ( -11.80, z-score = -2.34, R) >droGri2.scaffold_15252 10270502 95 - 17193109 ----------------UAAUUAUCACUAUCCG-AGACAAAAAACCGUGUCAAAUAUUUCUAAAUAGA---AACAGCAACAUGACACUUU-------UAGCUAAA-CUGAGACUCUACCAAUAA- ----------------...............(-((..........((((((....(((((....)))---))........))))))(((-------(((.....-))))))))).........- ( -12.50, z-score = -2.13, R) >consensus __________________ACAAUGACCACUCAGCGCCAAAAAACCGUGUCAAAUAUUUCUAUAUAGA___AAGAGCAACAUGACACUUUUAGCUCACAACCAAAGCCAAAAU____________ .............................................((((((.............................))))))...................................... ( -5.15 = -5.00 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:51 2011