| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,805,006 – 12,805,061 |
| Length | 55 |
| Max. P | 0.965660 |
| Location | 12,805,006 – 12,805,061 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 87.09 |
| Shannon entropy | 0.23087 |
| G+C content | 0.48000 |
| Mean single sequence MFE | -15.68 |
| Consensus MFE | -13.42 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12805006 55 + 23011544 UUCUCACGCAUCGGUUGGUCCAAUGAUUUACUUAGUGGGUCGGCUGCUGCAACUG .......(((.((((((..(((.(((.....))).)))..)))))).)))..... ( -19.10, z-score = -3.07, R) >droSec1.super_16 968523 55 + 1878335 UUCUUACGCAUCGGUUGGUCCAAUGAUUUACUUAGUGGGUCUGCUGCUGCAACUG .......(((.((((.(..(((.(((.....))).)))..).)))).)))..... ( -16.10, z-score = -2.34, R) >droYak2.chr2L 9226228 55 + 22324452 UUCUUACGCAUCGGUUAACACAAUGAUUUACUUAGUGGGUCUGCUGCUGCAACUG .......(((.((((..((.((.(((.....))).)).))..)))).)))..... ( -10.10, z-score = -0.56, R) >droEre2.scaffold_4929 14006512 55 - 26641161 UUUUUACGCAUCGGUUGACCCAAUGAUUUACUUAGUGGGUCUGCUGCUGCAACUG .......(((.((((.((((((.(((.....))).)))))).)))).)))..... ( -19.90, z-score = -4.26, R) >droAna3.scaffold_12916 3560213 55 - 16180835 CUCUUACGCAUGGCUUGGCCCAAUGAUUUACUCAGUUGGCUCGCUGGUGCUACUG .......(((((((..((((...(((.....)))...)))).))).))))..... ( -13.20, z-score = -0.52, R) >consensus UUCUUACGCAUCGGUUGGCCCAAUGAUUUACUUAGUGGGUCUGCUGCUGCAACUG .......(((.((((.((((((.(((.....))).)))))).)))).)))..... (-13.42 = -13.50 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:50 2011