| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,763,900 – 12,763,992 |
| Length | 92 |
| Max. P | 0.532016 |
| Location | 12,763,900 – 12,763,992 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 64.75 |
| Shannon entropy | 0.49276 |
| G+C content | 0.31267 |
| Mean single sequence MFE | -10.28 |
| Consensus MFE | -7.57 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12763900 92 - 23011544 CAAUACAAUGCAAUAACAGUAACAUAACAGCGCAAUUAAG-AUAUAAAAGAUAAAACCAAACCUCUCACUAAUCAUGUGAGGACUUACAAUAC ........(((....................)))......-......................((((((.......))))))........... ( -7.15, z-score = -0.12, R) >droEre2.scaffold_4820 1875255 92 + 10470090 CCGUAC-AUGCAGUACUAGUACCAUAACAUUGCAAUUAAACAUAUAAAUAAUAUAACCAAACUUCUCACUUAUCGUGGGAAGACUAACAUUAC ..((..-.((((((..((......))..))))))...........................((((((((.....))))))))....))..... ( -15.40, z-score = -2.23, R) >droMoj3.scaffold_6680 10719134 91 + 24764193 CCAUACAAUGCAAUUAUAGUACCUUAACAAGUCAGCUAGA-AAAUAAUAUAAAGAGCUUAACCUUCUGAUAUACACAGUAGGACUUAUAUAU- ............................(((((((((...-.............))))....((.(((.......))).)))))))......- ( -8.29, z-score = 0.85, R) >consensus CCAUACAAUGCAAUAAUAGUACCAUAACAACGCAAUUAAA_AUAUAAAAAAUAAAACCAAACCUCUCACUAAUCAUGGGAGGACUUACAUUAC .............................................................(((((((.......)))))))........... ( -7.57 = -6.80 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:47 2011