| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,711,577 – 12,711,638 |
| Length | 61 |
| Max. P | 0.961992 |
| Location | 12,711,577 – 12,711,638 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 75.63 |
| Shannon entropy | 0.47116 |
| G+C content | 0.50443 |
| Mean single sequence MFE | -17.57 |
| Consensus MFE | -12.83 |
| Energy contribution | -13.83 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12711577 61 + 23011544 UCCAAACGAAGGACCACUGUUUCCACCAAAAGGGACAUCGCUUCCUCCAAAGGAAGGUCCA ..........(((((..(((..(........)..)))....(((((....)))))))))). ( -17.50, z-score = -1.68, R) >droEre2.scaffold_4929 13930882 61 - 26641161 UCCAAAUGAAGGACCAGUGUUUCCAGCAAAAGGGACAUCGCUUCCUCCAAAGGAAGGUCCA ..........(((((.((((..(........)..))))...(((((....)))))))))). ( -18.60, z-score = -2.00, R) >droYak2.chr2L 9150506 61 + 22324452 UCCGAAUGAGGGCCCGGUGUUUCCAGCAAAAGGGACAUCGCUUCCUCCAAAGGAAGGUCCA .........(((((((((((..(........)..)))))).(((((....)))))))))). ( -21.80, z-score = -1.46, R) >droSec1.super_16 895832 61 + 1878335 UCCAAACGAAGGACCAGUGUUUCCACCAAAAGGGACAUCGCUUCCUGCAAAGGAAGGUCCA ..........(((((.((((..(........)..))))...(((((....)))))))))). ( -19.80, z-score = -2.31, R) >droSim1.chr2L 12518895 61 + 22036055 UCCAUACGAAGGACCAGUGUUUCCACCAAAAGGGACAUCGCUUCCUGCAAAGGAAGGUCCA ..........(((((.((((..(........)..))))...(((((....)))))))))). ( -19.80, z-score = -2.43, R) >droWil1.scaffold_180772 2379369 53 + 8906247 UCCAGUUAUUAGAGGAGCGUC----CUGAAUCUAGCAUGUUGUCUUCCAAAAGGCGA---- ....((((....(((.....)----)).....))))...(((((((....)))))))---- ( -7.90, z-score = 0.75, R) >consensus UCCAAACGAAGGACCAGUGUUUCCACCAAAAGGGACAUCGCUUCCUCCAAAGGAAGGUCCA ..........(((((.(((((((........)))))))...(((((....)))))))))). (-12.83 = -13.83 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:42 2011