| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,679,119 – 12,679,215 |
| Length | 96 |
| Max. P | 0.777048 |
| Location | 12,679,119 – 12,679,215 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.65 |
| Shannon entropy | 0.17005 |
| G+C content | 0.25965 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -12.61 |
| Energy contribution | -12.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12679119 96 + 23011544 AAUUUUAA-GAAAUUCGGAUUAAUUUAUUGAUCCAACUCAGUUUAAAGUUUUAUUGACUCUUCAAAAUAAAACAUAGCCA-----------CAAACAACUUACCGAAU ........-...(((((((((((....))))))).............((((((((..........)))))))).......-----------.............)))) ( -13.30, z-score = -2.02, R) >droSec1.super_16 863383 108 + 1878335 AAUUUAAAAGAAAUUCGGAUUUAUUUAUUGAUCGAACUCAGUUUAAAGUUUUAUUAACUCUUCAAAAUAAAACAUAGCCAAGAAGUCAACACAAACAACUUACCGAAU ............((((((.((((...(((((......))))).))))((((((((..........)))))))).............................)))))) ( -13.40, z-score = -1.33, R) >droSim1.chr2L 12487494 108 + 22036055 AAUUUAAAAGAAAUUUGGAUUUAUUUAUUGAUCCAAGUCAGUUUAAGGUUUUAUUGACUCUUUAAAAUAAAACAUAGCCAAGAAGUCAACACAAACAACUUACCGAAU ..((((((....(((((((((........)))))))))...))))))((((..(((((((((.................))).))))))...))))............ ( -16.83, z-score = -1.49, R) >consensus AAUUUAAAAGAAAUUCGGAUUUAUUUAUUGAUCCAACUCAGUUUAAAGUUUUAUUGACUCUUCAAAAUAAAACAUAGCCAAGAAGUCAACACAAACAACUUACCGAAU ............((((((.((((...(((((......))))).))))((((((((..........)))))))).............................)))))) (-12.61 = -12.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:39 2011