| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,675,340 – 12,675,431 |
| Length | 91 |
| Max. P | 0.963955 |
| Location | 12,675,340 – 12,675,431 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 71.11 |
| Shannon entropy | 0.51975 |
| G+C content | 0.40483 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -8.81 |
| Energy contribution | -9.03 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12675340 91 - 23011544 -UCUUCGGGUUUCUGCC-------AAAAAAAAAAAAACGGACAGAAAAAACGGACAAAAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGCGAAGAAAA -..((((..((((((((-------..............)).))))))...))))......(((((((((.((((............))))))))))))) ( -21.54, z-score = -1.84, R) >droSim1.chr2L 12483793 96 - 22036055 -UCUUCGGUUUUCUGUCUC--AAAAACAAAAAAAAAACGGGCAGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGCGAAGAAAA -((((((.((((((((((.--.................))))))))))..((.((((((((...(....).)))))))).))........))))))... ( -31.97, z-score = -4.09, R) >droSec1.super_16 859669 98 - 1878335 -UCUUCGGUUUUCUGUCUCAAAAAAAAAAAAAAAAAACCGGCAGGAAAAACGGCGCGCAAUUUUCUUCGACAUUGUGCGGCGAAAAAAUGCGAAGAAAA -((((((.(((((((((......................)))))))))..((.((((((((.((....)).)))))))).))........))))))... ( -28.75, z-score = -3.05, R) >droYak2.chr2L 9113682 87 - 22324452 -UCUUCGGUUUUCAGUCCC-----------AAAAAAACGGACUGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGUGGCGAAAAAAUGUGAAGAAAA -((((((.((((((((((.-----------........))))))))))..((.((((((((...(....).)))))))).))........))))))... ( -31.40, z-score = -4.28, R) >droEre2.scaffold_4929 13893664 87 + 26641161 -UCUUCGGUUUUCUGUCCC-----------AAAAAAACGCACUGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGUGAAGAAAA -(((((((((((.(.....-----------.).)))))............((.((((((((...(....).)))))))).))........))))))... ( -22.00, z-score = -0.90, R) >droAna3.scaffold_12916 3449255 74 + 16180835 -UUGCCUGUUUUCUAUC------------------------CCAAAAAAACGGUGCGCAAUUUUCUUCGCCAUUGUGACUGGAAAAAAUCGGAAGAAAA -..(((((((((.....------------------------.....))))))).))....((((((((((....))))..))))))..((....))... ( -14.80, z-score = -0.84, R) >dp4.chr4_group3 8267355 75 + 11692001 UUUGCCUGUUUUCUUGC------------------------UCAAAAAAAUUGCGCGCAAUUUUCUUGGGCAUUGUGCGGGGAAAAACUCUACGGAAAA (((.(((((.....(((------------------------((((.(((((((....))))))).)))))))....))))).)))...((....))... ( -25.00, z-score = -3.53, R) >droPer1.super_1 5381541 75 + 10282868 UUUGCCUGUUUUCUUGC------------------------CCAAAAAAAUUGCGCGCAAUUUUCUUGGGCAUUGUGCGGGGAAAAACUCUACGGAAAA (((.(((((.....(((------------------------((((.(((((((....))))))).)))))))....))))).)))...((....))... ( -28.00, z-score = -3.87, R) >consensus _UCUUCGGUUUUCUGUC_____________AAAAAAACGG_CAGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGUGAAGAAAA ..................................................((.((((((((.((....)).)))))))).))................. ( -8.81 = -9.03 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:38 2011