| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,624,441 – 12,624,533 |
| Length | 92 |
| Max. P | 0.632941 |
| Location | 12,624,441 – 12,624,533 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 73.06 |
| Shannon entropy | 0.49391 |
| G+C content | 0.54080 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.632941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12624441 92 - 23011544 ----CAAUCCCCCAAUACCGAAUGCCCAAUCCUCAAUCCCCGAUCCCUGGUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACC ----........(((..(((...(((((....((.......))....))).))..)).)...))).........((((((....))))))...... ( -16.20, z-score = -0.28, R) >droSim1.chr2L 12431341 91 - 22036055 ----CAAU-CCCCAAUACCGAAUGCCCAAUCCUCAGUACCCGAUCCCUGGUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACC ----....-.............((((((......((((((.(....).))))))..((((((..(....)..)))))).....))))))....... ( -21.70, z-score = -2.08, R) >droSec1.super_16 809031 91 - 1878335 ----CAAU-CCCCAAUACCGAAUGCCCAAUCCUCAGUACCCGAUCCCUGGUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACA ----....-.............((((((......((((((.(....).))))))..((((((..(....)..)))))).....))))))....... ( -21.70, z-score = -1.92, R) >droYak2.chr2L 9060597 89 - 22324452 AUUCCAAU-CCCCCAUACCCG------AAUCCCCAAACCACGAUCCCUGAUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACC ........-............------..((..((((.((((.............))))..))))..)).....((((((....))))))...... ( -14.62, z-score = -1.11, R) >droEre2.scaffold_4929 13841181 95 + 26641161 AUUCCAAU-CCCCCAUACCCAAUCUCCAAUCUCCGAUCCCCGAGCCCUGGUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACC ........-.............((..(((..((((...((((.....))).)...)).))..)))..)).....((((((....))))))...... ( -16.50, z-score = -0.16, R) >dp4.chr4_group3 3362523 75 - 11692001 ---------------UGCUCCCUGCUGGCUUCUC--UCUCUGGUGGUGGAUGCUAUGCGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACC---- ---------------.((((((..(..(......--...)..)..).))).)).....................((((((....))))))..---- ( -22.00, z-score = -0.97, R) >droPer1.super_1 4839745 74 - 10282868 ---------------UGCUCCCUGCUGGC-UCUC--UCUCUGGUGGUGGAUGCUAUGCGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACC---- ---------------.((((((..(..(.-....--...)..)..).))).)).....................((((((....))))))..---- ( -22.80, z-score = -1.25, R) >consensus ____CAAU_CCCCAAUACCCAAUGCCCAAUCCUCAAUCCCCGAUCCCUGGUGCUACGUGAAUUUGAUGACUUAUUCGCCCAAGUGGGCGACCCACC ..........................................................................((((((....))))))...... (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:35 2011