| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,621,068 – 12,621,175 |
| Length | 107 |
| Max. P | 0.690793 |
| Location | 12,621,068 – 12,621,175 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 71.75 |
| Shannon entropy | 0.53858 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -13.37 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12621068 107 + 23011544 AUGCAGGCUAAGUGAUAAGCAAACAGUCAACAAGGUUUGUUUACUCUUCAAAGAGCUCAAAAGAGU----GCGCAGACCCCAACUUGCAAUUACAUUGCCUUAAAAACUUA ....((((...(((((..((((...(....)..(((((((.(((((((............))))))----).))))))).....)))).)))))...)))).......... ( -25.70, z-score = -1.50, R) >droAna3.scaffold_12916 3397729 95 - 16180835 -----------AUG-CAGUUUGUUUGUCUUUCUGGUUUAAGGGCCGUCUUAGGGGGGCAAAUCAGUUAAAACGUAGAAUUUACUCAACAAGGGCUUUACUUUGUUUG---- -----------.((-(.((((((((((((..((((((....)))).....))..))))))))......)))))))..........(((((((......)))))))..---- ( -20.80, z-score = -0.48, R) >droEre2.scaffold_4929 13837855 107 - 26641161 AUGCAGGCUAAGUGAUAGGCAAACAGUCAACAGGGUUUGUUGACUUUUCAAAGAGCUCAAAAGAGU----GCGAAAGCCGCAACCUGUGAUUACAUUGCCUUAAAAACUUA ........(((((...((((((..(((((.((((((((.((((....)))).))))........((----((....).)))..)))))))))...)))))).....))))) ( -29.80, z-score = -1.58, R) >droYak2.chr2L 9057243 107 + 22324452 AUGCCGGCUAAGUGAUAAGCAAACAGUCAACAAGGUUUGUUGACUUUUCAAAGAGCUCCAAGGAGU----GCGAACACCGCAAACUGUAAUUACAUGGCCUUAAAAACUUA .....(((((.(((((..(((...((((((((.....)))))))).........((((....))))----(((.....)))....))).))))).)))))........... ( -28.70, z-score = -1.86, R) >droSec1.super_16 805721 107 + 1878335 AUGCGGGCUAAGUGAUAAGCAAACAGUCAACAAGGUUGGUUGACUCUUCAAAGAGCUCAAAAGAGU----GCGCAGACCUCAACUUGCAAUUACAUUGCCUUAAAAACUUA ....((((...(((((..((....(((((((.......))))))).........((((....))))----))((((........)))).)))))...)))).......... ( -25.00, z-score = -0.42, R) >droSim1.chr2L 12427975 107 + 22036055 AUGCAGGCUAAGUGAUAAGCAAACAGUCAACAAGGUUUGUUGACUCUUUAAAGAGCUUAAAAGAGU----GCGCAGACCUCAACUUGCAAUUACAUUGCCUUAAAAACUUA ....((((...(((((..(((...(((.....((((((((..(((((((.((....)).)))))))----..))))))))..)))))).)))))...)))).......... ( -27.10, z-score = -1.54, R) >consensus AUGCAGGCUAAGUGAUAAGCAAACAGUCAACAAGGUUUGUUGACUCUUCAAAGAGCUCAAAAGAGU____GCGCAGACCUCAACCUGCAAUUACAUUGCCUUAAAAACUUA .....(((...(((((..((((..((((((((.....)))))))).........((((....))))..................)))).)))))...)))........... (-13.37 = -14.10 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:34 2011